Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2230g00017 ATGGCTGGTATTGATGATAATGTTGCCCTTACTGGTGATTGGAATCTTCCTAGCCCGAGTCCAAGAACCCTTTTTTCTAAAATGTTAGGTGAAGATAATGTAACAAGAACAATCTCAGAACCTCCTGGAAGTGATAGAACTGGTGATCTCTTTATGGGAACTCATGATCCGGGTGAGACAGGGGAAGGAAACATGAAAGATAGGGCACAAGATGGTGATTCTGGTATCCATTTGACTGACTCGGGTTTTCGGACCGAGCAGAGGTCGAGCTCACGGGGTGGCCTTGTTGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCAAGGTTGAATACAGAAAGCATTAGATCTACTGACCTTTCACTTAATTCTGACATTCAGTCTCCTTACTTGACCATACCACCTGGACTCAGTCCTACTACACTTCTAGATTCTCCTGTGTTCCTCGCAAATTCGCTGGCACAGCCATCTCCAACAACTGGAAAGTTTCCATTCATGTCAAATGGCAACATCCGGTGCTCAGAATTATCATCTGATGCTCCAGAAAAATGCAAAGATAATGGCTTTGAGGATATCTATGCATCATCCTTTGCTTTCAAGCCTGCAACAGATTCAGGCTCCTCTTTTTATTATGGTGCTGGAAGAAAACTAAATCCAACTACACTTCCTCAACAATCCCTTTCTAGTATTGAGGCTTCAGTTCAATCGGAAAATTCATTTCAATCTCAAAGTGTCAATGCAGTAAAAGTTCAAACTGAGAATAAAAGTGGCCTCCATCTTCAGGCAGACTTTATTGAATCACCTCCTCAAAAAGATAATGGAATTAAGATGTTCTCAGCTGATCAAAGGACTTTTGACACTGTTGGTGGTAACATTGAACATTCTACACCGCTTGAAGAACAAGCAGATGAAGAGGGAGATCAAAGAGGCAATGGAGACTCAGTGGCTGCTGGTGTTGGTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGTGAGTACCCCCGAAGTTACTACAAGTGTACACATCCGAATTGTCAGGTTAAGAAGAAAGTAGAACGATCTCATGAGGGCCACATAACAGAGATCATTTATAAAGGAACGCATAACCATCCAAAACCTCCTCCAAATCGCCGGTCAGGCATGGGGTCAGTTAACCCTCTTACTGACATGCAAGTGGACAATCTCGAGCATGTTGAACCACAGAGTGGCGTTGACGGTGACCTGGGCTGGGCTAATGTACAAAAGGGAAGCATGACTGGAGCTGCTAATTGGAAGCATGACAACCTTGAAGCAACATCATCACCATCTGTCGGCCCTGAATACTGCAACCAGTCCCCCAATCTGAAGAATCAAAATGGTACTCACTTTGATTCTGGAGATGCAGTGGATGCCTCATCTACTTTTTCTAATGAAGAAGATGAAGATGATCAAGGCACTCATGGTAGCGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAATCTAAAAGAAGGAAACTAGAATCATATGCTACAGAGTTGAGTGGAGCTACCAGAGCTATTCGTGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATAGGTGGAGGAAATATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACTAATGCAGGCTGCACAGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATATGAGGGAAAGCACAATCATGATGTTCCTGCTGCTCGTTCTAGCAGCCATGTTAATGCTAACATATCTAACAATGTTCCTGGCCAAGCCTCAGGTATTCTTCAAACCCATGTTCATAGACCTGAACCATCTCAAGTTCACCACAATGGCATAGGAAGGCTTGAGAGACCTTCCATGGGATCATTCAACATACCTGGGAGGCAGCAGCTAGGACCTTCCCATGGCTTCTCCTTTGGGATGAATCAACCTATGCTGTCAAACCTGGCATTGTCAGGATTGGGCCACACGGCCGCGGGGCAAGCAAAGCTTCCTGGTATGCCTGTTCATCCATACTTTGCAGCACAACAACGCCCTGCAAATGAAATGGGTTTCATGTTACCAAAAGGAGAACCAAATGTGGAGCCTATTCCTGAACGTGGCCTTAATCTGCCTAGTGGCTCATCAGTTTATCAAGAAATTATGAGTCGCATGCCTCTTGGACCTCATATCTAA 2265 0.4419 MAGIDDNVALTGDWNLPSPSPRTLFSKMLGEDNVTRTISEPPGSDRTGDLFMGTHDPGETGEGNMKDRAQDGDSGIHLTDSGFRTEQRSSSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFMSNGNIRCSELSSDAPEKCKDNGFEDIYASSFAFKPATDSGSSFYYGAGRKLNPTTLPQQSLSSIEASVQSENSFQSQSVNAVKVQTENKSGLHLQADFIESPPQKDNGIKMFSADQRTFDTVGGNIEHSTPLEEQADEEGDQRGNGDSVAAGVGGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPNRRSGMGSVNPLTDMQVDNLEHVEPQSGVDGDLGWANVQKGSMTGAANWKHDNLEATSSPSVGPEYCNQSPNLKNQNGTHFDSGDAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANISNNVPGQASGILQTHVHRPEPSQVHHNGIGRLERPSMGSFNIPGRQQLGPSHGFSFGMNQPMLSNLALSGLGHTAAGQAKLPGMPVHPYFAAQQRPANEMGFMLPKGEPNVEPIPERGLNLPSGSSVYQEIMSRMPLGPHI 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2230g00017 754 SUPERFAMILY WRKY DNA-binding domain 533 601 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 ProSiteProfiles WRKY domain profile. 536 601 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 298 331 - -
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2230g00017 754 Gene3D WRKY domain 528 594 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 143 620 IPR044810 GO:0003700
Gabi2230g00017 754 ProSiteProfiles WRKY domain profile. 325 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 439 476 - -
Gabi2230g00017 754 FunFam WRKY transcription factor 315 384 - -
Gabi2230g00017 754 SUPERFAMILY WRKY DNA-binding domain 323 383 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 34 94 - -
Gabi2230g00017 754 SMART WRKY_cls 541 600 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 SMART WRKY_cls 324 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 439 510 - -
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 375 397 - -
Gabi2230g00017 754 Pfam WRKY DNA -binding domain 542 598 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 Pfam WRKY DNA -binding domain 325 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 MobiDBLite consensus disorder prediction 60 74 - -
Gabi2230g00017 754 Gene3D WRKY domain 314 384 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2230g00017 754 FunFam WRKY transcription factor 33 528 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2230g00017 Gabi-Chr2230 142696 147866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2230g00017 1 749 WRKY Transcription Factor Family AT5G56270 51.358 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi2230g00017 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2230g00017 K18835 - gmx:100796545 1286.94