Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2229g00006 ATGAAGACGCAACCTCAGCCTGACGGTGTCTCCGCTGCTCCACCCAATCCCTCCCAAGAGAAGAAGAGCATAAACCAGGAGCTATGGCAAGCTTGTGCGGGGCCACTGGTGAACCTTCCCCACGCTGGGACTCACGTTATCTACTTCCCTCAAGGCCACAGCGAACAGGTTGCGGCTTCTTTGAAGAAAGACGTCGACGCCCAAGTTCCCAACTATCCCAATCTTCCCTCAAAGTTACTCTGTCTCCTTCACAATGTCACCTTGCATGCTGATCCTGAAACCGATGAAGTATATGCTCAGATGACACTTCAACCGGTGCCTTCTTTTGACAAGGATGCTTTATTAAGGTCAGATCTTGCTCTCAAGTCAAGCAAGACCCAACCTGACTTTTTCTGTAAACAACTCACGGCAAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCTCGCCGAGCAGCGGAGAAGATTTTCCCCCTTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTGGCCAGAGATTTGCATGATACTGTTTGGACATTCCGTCATATATACCGCGGACAACCAAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTATTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCTACCAATATATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCAGCCCATGCTGCGGCAAACAACAGTCCCTTCACCATCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATCCCATTAGCAAAGTACTACAAGGCTGTTTACAACCACCAAATATCACCTGGCATGCGTTTCCGAATGATGTTCGAAACTGAAGACTCGGGAACAAGAAGGTATATGGGTACTATTACAGGTATCAGTGATCTTGATCCTGTGAGATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGCGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCTGTGACTGCTCCTTTTTTCATCTGTCCTCCGTTCTTTAGATCCAAGAGGCCAAGACAACCGGGAATGCCTGATGATGATCCATCTGATTTTGATAACCTCTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGTTCAATGGATGAGCATGCAGCAAAATCCTGCTCTCGCTAGCTCATTGCAGCCAAATTATGTGCCTTCCATATCAGGATCTGTTCTGCAAAATCTTCCTGGTGCAGATATTTCCCGTCAGCTTGGGTTTTCTGCTCCACAAATTTCTCAGTCAAACAATTTAGCCTTCAATGCTCAGAGGCTACTTCAGACTTCCCAACAAGTTGATCACCTTCAGAAGCTACCATCCGCTTCTAGCACATTGGGGACAGTCCTGCAGCCGCAGCAACAGTTGGGTGATATCACTCAACAACCTAGGCAGAACTTGGCAAATCAAACACTTCAACACAGTCAAGTTCAGGCCCAACTCTTGCATCCTCAGAATCTTGTACAAACCAACTGTATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAACACCATAGAAGCCTCTCTCAAAACCCACCACAGCAGCAGCAGCAACAGACAATTATGGGTCAGAATCAGCAACAAAGTTTGATCCAATCCTCTATGCCTGATCATGTTCAACAATTACAGATGTCTGATAATCAGATTCAGTTTCATTTGTTACAGAAGCTTCAACAACAAAAACAAACGCTCTTAGCACAGCAATCTGTACAGCAGCAGCCTACTCAACTTACTCAAATTCAGGATCAGCAGAGGCAGCTTTTAGATAAACCACAGAACTTGTCTAGAGCATTAACGCCTGGTCAAGTGCTGGAAATTCCTTCTATACTTCAAAATTCACTCCCTGAGGCTAGTTCTATCTCACATCAGATGACAAAGGTTAATGCCCCGAACAATATTCAATTCTCTCATCTGCCTCAGCAGCCAAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAATGTCTGGCCACATGGGACTTCCCCCTACCCCAACAACCAACCAGCTCTCTGCTGCTGGCGGTGGTATACTGACCAGAGCAGCTGGTGTCGGGCAATCTGTAATTACTGATGATGTTCCATCTTGTAACACTTCACCTTCTACAAATAACTCTGCCAATGCACTTCCACCACCGATAAATTCTGGACTCCATAGAAGCACATCAGTAGTGGATGACATGGCTCAGTCTGCTGCCACAATCTTGAGTTCAAGTGGCTTAGAAACCATGTCATCAAATGCAACCTTGTTGAAAGATTTACAGCCAAAGGCTGAAGTTAAGCCTTCTCTGAACATTTCCAAAAATCAGAATCATGGAAATTTTGGTCCTCAGACGTACTTGACTGGTGGTGCTGCCCAGACAGATTATTTGGATACATCATCTTCTACAACATCAGTTTGCCTATCTCAGAGTGACGCTCATATGCATCAGAATAACAACCCATTATCTTACAATCCACAGTCGATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGAGGCAATATTCCATATGGCAATAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCATTTTAACCAAAGGCACATTGGGGCTGGGGAAGGATTTATCTAATAATTTCTCTTCAGGAGCCATGCTTGGTAACTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACAATAGACGATAGTAGCTTCTTGAATAGGGGTCCATGGGCTCCACCACCAGCACCGCCACCAGCACAGTTTCAGCGAATGAGGACATACACCAAGGTATATAAACGGGGAGCAGTGGGAAGATCCATAGACATAACACGGTATTCAGGTTATGAAGAGCTTAAACAGGATCTAGCTCGTAGGTTTGGCATAGAGGGACAGCTGGAGGATCGGCAGAGGATAGGTTGGAAACTTGTCTATGTAGATCATGAGAATGATGTTCTATTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTTCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGCTGGAGATTTTGGCAATGGTGGCCTTCCAAATCAAGCCTATAGCAGCTCTGACGGTGGGAACACTTAG 3342 0.45 MKTQPQPDGVSAAPPNPSQEKKSINQELWQACAGPLVNLPHAGTHVIYFPQGHSEQVAASLKKDVDAQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKTQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPLLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYYKAVYNHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPFFRSKRPRQPGMPDDDPSDFDNLFKRTMPWLGDDMCMKDPQGLPGLSLVQWMSMQQNPALASSLQPNYVPSISGSVLQNLPGADISRQLGFSAPQISQSNNLAFNAQRLLQTSQQVDHLQKLPSASSTLGTVLQPQQQLGDITQQPRQNLANQTLQHSQVQAQLLHPQNLVQTNCILQQQQPSIQNHQHHRSLSQNPPQQQQQQTIMGQNQQQSLIQSSMPDHVQQLQMSDNQIQFHLLQKLQQQKQTLLAQQSVQQQPTQLTQIQDQQRQLLDKPQNLSRALTPGQVLEIPSILQNSLPEASSISHQMTKVNAPNNIQFSHLPQQPKLQQQQPGLLSEMSGHMGLPPTPTTNQLSAAGGGILTRAAGVGQSVITDDVPSCNTSPSTNNSANALPPPINSGLHRSTSVVDDMAQSAATILSSSGLETMSSNATLLKDLQPKAEVKPSLNISKNQNHGNFGPQTYLTGGAAQTDYLDTSSSTTSVCLSQSDAHMHQNNNPLSYNPQSMLFRDNSQDGEVQADARGNIPYGNNIDSQMGMPLNPDSILTKGTLGLGKDLSNNFSSGAMLGNYENNRDAQQELSSSMVSQTFGVPDMTFNSIDSTIDDSSFLNRGPWAPPPAPPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLAGDFGNGGLPNQAYSSSDGGNT 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2229g00006 1113 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Gabi2229g00006 1113 ProSiteProfiles PB1 domain profile. 1001 1085 IPR000270 GO:0005515
Gabi2229g00006 1113 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Gabi2229g00006 1113 FunFam Auxin response factor 129 233 - -
Gabi2229g00006 1113 Gene3D - 129 232 IPR015300 -
Gabi2229g00006 1113 SUPERFAMILY CAD & PB1 domains 1014 1079 - -
Gabi2229g00006 1113 SMART B3_2 131 233 IPR003340 GO:0003677
Gabi2229g00006 1113 CDD B3_DNA 130 222 IPR003340 GO:0003677
Gabi2229g00006 1113 FunFam Auxin response factor 996 1090 - -
Gabi2229g00006 1113 SUPERFAMILY DNA-binding pseudobarrel domain 120 260 IPR015300 -
Gabi2229g00006 1113 Gene3D - 996 1090 - -
Gabi2229g00006 1113 MobiDBLite consensus disorder prediction 553 586 - -
Gabi2229g00006 1113 FunFam Auxin response factor 295 366 - -
Gabi2229g00006 1113 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi2229g00006 1113 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2229g00006 1113 Gene3D - 295 366 - -
Gabi2229g00006 1113 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 623 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi2229g00006 1113 Pfam AUX/IAA family 1000 1086 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2229g00006 Gabi-Chr2229 100129 107184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2229g00006 20 473 B3 DNA Binding Superfamily AT1G19220 73.362 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi2229g00006 AUX_IAA 3.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2229g00006 - - ccaj:109803454 1791.93