Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2228g00024 ATGGACTTTGTGAAGAAGTGTAAGAGGGTATGCAGAAGCAGCAAGAGATTGCATGCTGAAAAAGAAGACATTGGCAAATACGGTAAATTGTCAGAGAAGCACATGCAAAAGAAGAAGAAGAAGAAGAATAAGCCTCAAGTGGCTCCGCAGGGTTGTCTTTTTGTCTACGTTGGACCTGAGAGACAAAGATTCGTAATAAAGATCAAGCTCACAAACAACCCTTTGTTCAAGACTCTTTTGGATGCTGCTGAGAATGAATATGGTTCTAGAAACGATGGTCCCCTATGGTTACCTTGCAATGTTGATTTTTTCTCTGAGGCATTGGCAGAGATGGAGAGCCCTGAGGATGATATGGGTTTTGTAGGTTGCAACTTTCCAATGGGTCACAAGCAGAGCTCCTCAGTTTTCCACAGTCCAATGTCTTATCGTTCTAACCTGAGTTTTGCTGCCAATTATGAGCTTTTGTACTCCATATTGGGCCCGAACCTTGACAAGCTTCCTTCTCAGGATGAAGCCATCCAACTGTTCCAACTATGGAAGAAAGAGCATGGACGGGTCTACAAAGACCTAGAAGAGATGGCAAAAAAATTTGAAATTTTCGTGTCCAATTTGAAGTACATAACAGAGTCTAATGCAAAGAGAAGGTTTCCTTCTGACTACTGTCTTGGTTTGAACAAGTTTGCTGATTGGAGCCCTAAGGAGCTCCAAGAAACCTACTTACATAACCTTGATATGCCCACAGACAGTGGCATGAAGCTCAATGACTCAAACTGTAATGCACCTTCATCCTTGGACTGGAGGTCTTCAGGGGTTGTGACTGGAGTTAAGGACCAACGAAACTGTGGAAGTTGTTGGGCATTCTCAGCCACGGGTGCCATTGAAGGAATAAATGCAATATCTACAGGAAAACTTATCAGTCTTTCGGAGCAAGAGCTTGTGGATTGTGACCATATAAGCCACGGTTGTGACATGGGATGGGTGGATAAAGCATTCGATTGGGTTATAAAAAATGGTGGAATTGCTTTGGAACATGATTATTCTTATACTGGAAAGGAGGGTACATGCAAAGCCTCAAAGATTCCAAAGAGTGCAAGCATTGATAGATATGATCACGTAGCACAATCGGATAATGGACTGCTGTGTGCAACTATTAAGCAGCCTATTAGTGTGTGTCTGTATGTAGCCACCGACTTTTTCCATTACAAATATGGAATCTATGATGGTCCTAACTGCCCAATAAATTCTACGGTTACAAATCATTGCGTGTTAATAGTGGGATATGACTCGAAAGATGGTGTGGATTTTTGGATCGTGAAGAATCAATGGAACACAACATGGGGAATGGATGGTTATATGTGGATCAAAAGAAACACTGGTTTACCATTTGGGGTATGTGCAATAAATGCATGGGCTTATAGCCCAATTAAATATCATTGA 1437 0.4175 MDFVKKCKRVCRSSKRLHAEKEDIGKYGKLSEKHMQKKKKKKNKPQVAPQGCLFVYVGPERQRFVIKIKLTNNPLFKTLLDAAENEYGSRNDGPLWLPCNVDFFSEALAEMESPEDDMGFVGCNFPMGHKQSSSVFHSPMSYRSNLSFAANYELLYSILGPNLDKLPSQDEAIQLFQLWKKEHGRVYKDLEEMAKKFEIFVSNLKYITESNAKRRFPSDYCLGLNKFADWSPKELQETYLHNLDMPTDSGMKLNDSNCNAPSSLDWRSSGVVTGVKDQRNCGSCWAFSATGAIEGINAISTGKLISLSEQELVDCDHISHGCDMGWVDKAFDWVIKNGGIALEHDYSYTGKEGTCKASKIPKSASIDRYDHVAQSDNGLLCATIKQPISVCLYVATDFFHYKYGIYDGPNCPINSTVTNHCVLIVGYDSKDGVDFWIVKNQWNTTWGMDGYMWIKRNTGLPFGVCAINAWAYSPIKYH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2228g00024 478 PRINTS Papain cysteine protease (C1) family signature 278 293 IPR000668 GO:0006508|GO:0008234
Gabi2228g00024 478 PRINTS Papain cysteine protease (C1) family signature 435 441 IPR000668 GO:0006508|GO:0008234
Gabi2228g00024 478 PRINTS Papain cysteine protease (C1) family signature 420 430 IPR000668 GO:0006508|GO:0008234
Gabi2228g00024 478 SUPERFAMILY Cysteine proteinases 170 474 IPR038765 -
Gabi2228g00024 478 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 170 468 IPR013128 GO:0008234
Gabi2228g00024 478 CDD Peptidase_C1A 261 474 IPR039417 -
Gabi2228g00024 478 Pfam Auxin responsive protein 6 109 IPR003676 GO:0009733
Gabi2228g00024 478 Pfam Papain family cysteine protease 261 474 IPR000668 GO:0006508|GO:0008234
Gabi2228g00024 478 FunFam Cysteine proteinase RD21A 153 476 - -
Gabi2228g00024 478 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 278 289 IPR000169 -
Gabi2228g00024 478 SMART Inhibitor_I29_2 176 235 IPR013201 -
Gabi2228g00024 478 SMART pept_c1 260 475 IPR000668 GO:0006508|GO:0008234
Gabi2228g00024 478 Gene3D Cysteine proteinases 156 477 - -
Gabi2228g00024 478 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 418 428 IPR025660 -
Gabi2228g00024 478 Pfam Cathepsin propeptide inhibitor domain (I29) 176 234 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2228g00024 Gabi-Chr2228 215075 221322 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2228g00024 45 117 Calmodulin-binding Proteins AT3G43120 45.946 4.33e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2228g00024 - - gmx:100802490 477.248