Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2228g00023 ATGATTTCTGGCTCTGATATTTCGAGGGTGTTCAATCCCACTTCAGATAGCCTTGGTGCTTCAAATGGGATTTCAAGAGGCGGGTTTGCATCACCGCATTCGTTGGATTCGGATATTGAGAAGGAAGAACTTGTTAAGTCCCCTGCAATGATAGTACATAAAAAGATTCGCGAGGCCAAAGCTTTAGCGGCTTTGAAGAACCATAGAGAAGCAGAAAAGAGGAGAAGGGAGAGAATTACTAGTCATCTTGCTACCCTCCGTGAACTTGTGCCTTGCACCGCAAAGATGGATAAAGCAACATTACTAGCTAAAGTTATTAGCCGAGTGAAGGAATTGAAGAAGAATGCAGCGGAAGCAAGCAAAGGTTTTCTAATTCCCATGGATGCTGATGAAGTGAAAGTAGAACCATCTTATGATGGATCAATGTCTTACAGGGCATCTGTTTGCTGTGATTATCGACCTGAGCTACTATCTGAGCTAACACAAACTCTTGAAGCCCTTCAACTACAATTGGCACTGAGTTTTGTATTGGATAAGGCTTCTAGCTCAATGGAGTACTCGCTAACAACTTCAAATCCAAGCAAGCGTTCAAGACTCTGCTATGCAAAATATAATTTTATTCTCAAGTTGAAGTTGTCGCTGTCATTGCTGATATATATTGCCATTGCTAGCGTAGTCTTTTGA 684 0.4167 MISGSDISRVFNPTSDSLGASNGISRGGFASPHSLDSDIEKEELVKSPAMIVHKKIREAKALAALKNHREAEKRRRERITSHLATLRELVPCTAKMDKATLLAKVISRVKELKKNAAEASKGFLIPMDADEVKVEPSYDGSMSYRASVCCDYRPELLSELTQTLEALQLQLALSFVLDKASSSMEYSLTTSNPSKRSRLCYAKYNFILKLKLSLSLLIYIAIASVVF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2228g00023 227 SMART finulus 69 118 IPR011598 GO:0046983
Gabi2228g00023 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Gabi2228g00023 227 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Gabi2228g00023 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 118 IPR036638 GO:0046983
Gabi2228g00023 227 Gene3D - 58 121 IPR036638 GO:0046983
Gabi2228g00023 227 PANTHER TRANSCRIPTION FACTOR BHLH30 31 170 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2228g00023 Gabi-Chr2228 183883 185379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2228g00023 48 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 37.931 7.86e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2228g00023 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2228g00023 - - gmx:100804756 222.631