Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2228g00022 ATGTCTACTAGTACTACTCCATCATCTTCATCTTCATCTTCTTCTTCTTCTTCTATTTGGGTATTGACTACCATAAAGCTTCGGTTCTTTGCCCGCATCAAACGGTTTCTTCAATCCAAAGCAACCCGGAAGCGCTGTGACCCCTCTGATCGAATTGACATAGCAAAAAGCAGAGCTGAAGATAACAAGAAGGTTGAGAATCTAGAAACAGTTCAAGTTATGGAGAAGCATAAGGAGGAGGAGTCTTCAACCCTTTTGCAGAGGACTGTGAAGATGCTTCACTTTGGGAACTGGGAAGAGAAGGAGATGGCAGCAAAGGAGATTGAAAGGTTAGCTAAAGAAGATGTCAAGGTTAGAAAGTTGATAACAGAATTTAGGGTGGTGCCGATGTTGGTATCTATGGTGGAGTCACCGGTTGCTAGCCGCCGACGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGACGGAACTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTACCTAAGACAATTGAACTTGTAGATGAATCAACAATAAGTGAATTTGCAGAGTTGCTTTTATCATTGTCATCTCTGGCAAACACACAATTCCCTCTTGCTTCATTAGACTTTCTCCCATTACTTAGGTACATTCTCGAGACAGGCTCAAGTTTTGATACCAAACAATCATGTTTGGGTGCCTTATACAATCTATCAACTGTGTTAGAGAATGCAGGCCCTTTGGTTTCTAGTGGGGTTGTTCCTATCCTCTTGGAACTGTCCTTAGTGAAGGAAATTTCAGAGAAGGCACTTGCCACTCTAGGGAACTTGTTAGTGACTTTGATGGGAAAGAAAGCAATAGAGAACAGCTCAATGGTGCCAGAAAGCTTTATTGAGATATTGTCATGGGAAGATAAACCCAAATGCCAAGAATTGTCAGTTTATATTTTGATGATTCTAGCGCATCAAAGCTCATCCCAAAGAGAGAAAATGACACAGACTGGGATTGTTTCTGTGCTTCTCGAAGTGGTTTTATTGGGGAGCCCTTTAGCTCAAAAGAGAGCAATGAAATTATTGCAATGGTTTAAGGATGAAAGGCAAAAAAAGATGGGGCCACATTCGGGTCCACAAACACCTAGATTTGCAATGGGTTCACCAGTAAATCAAAGAGAGGCAAAAGAAGGCAAGAAATTGATGAAGAGTTTGGTGACACAAAGCTTGCATAGGAATATGGAAATAATAACGCAGAGGGCAAATGCAGCTGGGGAGTCTTCTAAGCTGAAGTCATTGATTATCAGCACAAGTTCCAAGAGTTTGCCCTACTAA 1323 0.4218 MSTSTTPSSSSSSSSSSSIWVLTTIKLRFFARIKRFLQSKATRKRCDPSDRIDIAKSRAEDNKKVENLETVQVMEKHKEEESSTLLQRTVKMLHFGNWEEKEMAAKEIERLAKEDVKVRKLITEFRVVPMLVSMVESPVASRRRAGLTALIHLADGTYTNKALIVEAGILSKLPKTIELVDESTISEFAELLLSLSSLANTQFPLASLDFLPLLRYILETGSSFDTKQSCLGALYNLSTVLENAGPLVSSGVVPILLELSLVKEISEKALATLGNLLVTLMGKKAIENSSMVPESFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMTQTGIVSVLLEVVLLGSPLAQKRAMKLLQWFKDERQKKMGPHSGPQTPRFAMGSPVNQREAKEGKKLMKSLVTQSLHRNMEIITQRANAAGESSKLKSLIISTSSKSLPY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2228g00022 440 SUPERFAMILY ARM repeat 90 361 IPR016024 -
Gabi2228g00022 440 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 440 - -
Gabi2228g00022 440 MobiDBLite consensus disorder prediction 367 386 - -
Gabi2228g00022 440 SMART arm_5 157 197 IPR000225 GO:0005515
Gabi2228g00022 440 SMART arm_5 115 155 IPR000225 GO:0005515
Gabi2228g00022 440 SMART arm_5 240 278 IPR000225 GO:0005515
Gabi2228g00022 440 SMART arm_5 198 239 IPR000225 GO:0005515
Gabi2228g00022 440 Gene3D - 56 421 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2228g00022 Gabi-Chr2228 174810 177830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2228g00022 84 378 U-box Gene Family AT1G67530 30.719 8.52e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2228g00022 - - gmx:100819002 688.723