Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2228g00021 ATGGAATTTCAGAAGAAGCAAAAGATTGACGAGGGTGGCCACTTCGAATCCCCTCCACCACCCTCCTCCGCCGCCATTGCCTCCCTCACGCCGGAAGAAATTCTAAAAATCATCAAACCCTTTGACCGAAACAAGGTCATCGACATTCTCGAAACCGCAGCACTTCGTCACCCCGAAGTGCTCAACGCCATTCGTTCCGTCGCCGACCGCGACACCAATCTCCGGAAGCTCTTCGTCCGGGGACTCGGCGGCGACACCACCAGCGCCTCACTCCACGAGGTCTTCTCCGCCTTCGGGCCTATCGACGAGGCCGCAGTCATCTACGACAAAGCGACGGGTAGGTCCAAAGGTTACGGCTTCGTGACGTTCACGCACGTTGACGGCGCCGTTTCGGCTGTGAAGGAAACCAGCAAGATAATAGACGGGAGAATGACGGTTTCTAATCTTGCTTCTGTTGGTGTTTTGAGGGACGATAACGAGGTTTGGACGAGGAAGATCTTCGTGGGGAACGTGCCGTTTGATATGTCGCCGGGGAGGCTGTTGACTTATTTTGAGACGTTTGGTGAGGTGGAAGAAGGGCCTCTTGGGTTTGAGAAATGGAATGGAAAGACCAAAGGCTTCGCTTTCTTCGTGTACAAAACGGAGGAAGGTGCGAAAGCCTCGTTGGTTGAGCCTATCAAGACAATTGATGGGTTTCAGGTGAATTGCAAGTTGGCCATTGAAGGCAAGAAGGGAAGGCCATTAACAACAACAGCGACGACGTCGCAGGGTACCCAGGGTTTTGCTGGAGATGGAATGAATGGTCAGCAACAGTTTCAGCAGCAGCAGCAGCATGCTCCTACTACTACGATGGATCAGTCATCACAACAATATTGGGGGTATGGATATGGATATGCTGCTCATCATGCTCCGTTGCCTGGACCTGGAATGCAGTCGTCTTCGTTTGGTAATCCATATGGTTATGGTTATGGTGGTTACGCTTACGACTATGGAGGAAGCATGCATCCGAATTATTATGCTGGTGGAATCCCTGCTGGGGGATTTGGAGATGGCTATGCGCATCAACAACAGCCCATGCAAGTTCCCACTCAGCCACCCCAAGGCACGTTCCAAGGCATGTTGCCTTATCAATGA 1134 0.5203 MEFQKKQKIDEGGHFESPPPPSSAAIASLTPEEILKIIKPFDRNKVIDILETAALRHPEVLNAIRSVADRDTNLRKLFVRGLGGDTTSASLHEVFSAFGPIDEAAVIYDKATGRSKGYGFVTFTHVDGAVSAVKETSKIIDGRMTVSNLASVGVLRDDNEVWTRKIFVGNVPFDMSPGRLLTYFETFGEVEEGPLGFEKWNGKTKGFAFFVYKTEEGAKASLVEPIKTIDGFQVNCKLAIEGKKGRPLTTTATTSQGTQGFAGDGMNGQQQFQQQQQHAPTTTMDQSSQQYWGYGYGYAAHHAPLPGPGMQSSSFGNPYGYGYGGYAYDYGGSMHPNYYAGGIPAGGFGDGYAHQQQPMQVPTQPPQGTFQGMLPYQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2228g00021 377 Gene3D - 155 281 IPR012677 -
Gabi2228g00021 377 SUPERFAMILY RNA-binding domain, RBD 160 259 IPR035979 GO:0003676
Gabi2228g00021 377 MobiDBLite consensus disorder prediction 260 285 - -
Gabi2228g00021 377 PANTHER GEO13361P1-RELATED 163 331 - -
Gabi2228g00021 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 255 IPR000504 GO:0003723
Gabi2228g00021 377 SMART rrm1_1 165 237 IPR000504 GO:0003723
Gabi2228g00021 377 SMART rrm1_1 76 148 IPR000504 GO:0003723
Gabi2228g00021 377 Gene3D - 66 153 IPR012677 -
Gabi2228g00021 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 222 IPR000504 GO:0003723
Gabi2228g00021 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 142 IPR000504 GO:0003723
Gabi2228g00021 377 MobiDBLite consensus disorder prediction 355 377 - -
Gabi2228g00021 377 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2228g00021 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Gabi2228g00021 377 MobiDBLite consensus disorder prediction 356 371 - -
Gabi2228g00021 377 SUPERFAMILY RNA-binding domain, RBD 67 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2228g00021 Gabi-Chr2228 166718 167851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2228g00021 147 351 C2H2 Transcription Factor Family AT2G19380 32.444 8.99e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2228g00021 K12741 - gmx:100804230 315.079