Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2223g00009 ATGGTTTTACTTGGACAGTTAGAGCAGTGCATGCAGCAAGGTCGAAGTTACTATAACTCACAAGCTCAAAGATTATCTCGGGCATCATTATTAGAGACATACCGTAAGACATGCCATAAGAGTTTATCAAAGCAAAGAACAAAGAAAGAAATCAGAGCGCAAGCTGCTAGAAAACATAGTGAAGCCGAAAAGAGACGTAGATTGAGAATCAACGTTCAATATGCGGTACTCCGCGATAAACTCCCCAACATACTCAGAAAGGACAAGGCATCACTACTAGGGGAGTCTATAAAGCAAGTGGAGGAGCTGTTGAACAATGTAGCAACAATTGAAGAAAATAGTGATGACCTAGAGGAGGAGAATGTGTTTCCTAATGTGAATGATGATTTGGCTGTGGAAAAATGCAATGATGAACAGGGTTTAGTAAAGGCCACGTTGAGTTGTGAGGATAGGCCAGGATTGATGCTAGCTATTTCAAGGGCGGTAGCGGAGGTAAAAGCCAAAGTGGTAAAGGCTGAGATGGTGATGATGGGTGAAAGATTCAAAAGTGTGTTGTGGATTCAGTATCCTGCAAATGAAAATGTTACCATGCTCAAGAGGGTTTTGAAGGTTGTCATGCAAAAGCCATCTTTTAAGATGAGGTCGCTTAATATTTCATAA 660 0.4106 MVLLGQLEQCMQQGRSYYNSQAQRLSRASLLETYRKTCHKSLSKQRTKKEIRAQAARKHSEAEKRRRLRINVQYAVLRDKLPNILRKDKASLLGESIKQVEELLNNVATIEENSDDLEEENVFPNVNDDLAVEKCNDEQGLVKATLSCEDRPGLMLAISRAVAEVKAKVVKAEMVMMGERFKSVLWIQYPANENVTMLKRVLKVVMQKPSFKMRSLNIS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2223g00009 219 Pfam ACT domain 145 204 - -
Gabi2223g00009 219 CDD ACT_UUR-ACR-like 145 193 - -
Gabi2223g00009 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Gabi2223g00009 219 SUPERFAMILY ACT-like 144 209 IPR045865 -
Gabi2223g00009 219 PANTHER TRANSCRIPTION FACTOR BHLH30 24 210 IPR045847 GO:0003700|GO:0006355
Gabi2223g00009 219 SMART finulus 60 109 IPR011598 GO:0046983
Gabi2223g00009 219 Gene3D - 50 123 IPR036638 GO:0046983
Gabi2223g00009 219 Coils Coil 93 120 - -
Gabi2223g00009 219 Gene3D - 141 215 - -
Gabi2223g00009 219 Pfam Helix-loop-helix DNA-binding domain 57 97 IPR011598 GO:0046983
Gabi2223g00009 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2223g00009 Gabi-Chr2223 247228 248686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2223g00009 55 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 35.928 1.68e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2223g00009 ACT_6 4.7e-06 CL0070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2223g00009 - - qsa:O6P43_025220 192.971