Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2223g00007 ATGCAGCCTCATCGCTCTAAGGTGCAAGACAATGTACTCAAAATGATACCACGTGGATACAAATTTTGTCCTGATGATGTTGAATTGATCAAGTATTATTTGAAGCCCAAAATCGATGGTCATATAATATATCCTGGCAGGATTCATGATGTTGATGTTTACATGCATTCTCCTCAAGAACTAAATGATACATATAAATACGAAGGAGAGCAACATACATACTTTTTTACTCCAAGAAATAGGAAATATCCTAATGGAAAACGCCCTGATCGAGCTACTGGACAGTTCGGTTTTTGGAAGGCTACTGGAAAAGGGATTCCAATAATATGCAATGACATAGTGATTGGAAATAAAAGGAGTTTGGTATTTTATCAAAAGAAGCCTACAGATGGAGTGAAAGAGGCAGTGAAAACCAATTGGATTATGCAAGAGTTCACTGTTGAAAAAGAGAAAAATCTTGCAAGTTCAAGTACAACTCCTCCCTGCACGATGCAGTTAGATGATTGGGTTTTATGTAAGATTTACAAGACTAAGCATGAGACTGAAAAGCGAGATCGTGAAGAAGTTACAATATCAACAAATGTTGCCAAAAAATGTAAATCCAGTCAACTTTTTGAGGGTCAGTATATGCAAACTCACTTGTCCACAAATGTGGTTGATACTCCACAGTTTGAATTCAATCAAGATGCTCTGCATACACAACCACACTTGTCCACCAATTTAATTGCCTCTCCACAGTGTCAACCCAATCAATATTTTGATATTGATCAATATATGCAAAATCTCATTTCCTCTTCTTCTCCAACCTTAGAGAGTATAATACACGAAAACTCATCTATTCCTTCCCGTTTTTCACTTCCAATGCAATCATCGGAGTTTAATGATTCTTACTTGCAAATGGAGTTTAATGATATCCATGTGGCTGCCACCAATGTGGTTGACACTCCAGAGTTTCAACCCGATCAATATTCTGAGGCACAAAATATGCAAAGGCCATTTTCACCTTCTGCCCCTTCCTCAGACTTGATTATTCCTCCTCATGCTCCAGTTCCTGTGCAATCATCGGATGAGGAGTATATTGATCCATATGAGCTAATAATAAACTTCGATAATATTGATGAAGCTTTGGATTTTGAATAA 1140 0.3728 MQPHRSKVQDNVLKMIPRGYKFCPDDVELIKYYLKPKIDGHIIYPGRIHDVDVYMHSPQELNDTYKYEGEQHTYFFTPRNRKYPNGKRPDRATGQFGFWKATGKGIPIICNDIVIGNKRSLVFYQKKPTDGVKEAVKTNWIMQEFTVEKEKNLASSSTTPPCTMQLDDWVLCKIYKTKHETEKRDREEVTISTNVAKKCKSSQLFEGQYMQTHLSTNVVDTPQFEFNQDALHTQPHLSTNLIASPQCQPNQYFDIDQYMQNLISSSSPTLESIIHENSSIPSRFSLPMQSSEFNDSYLQMEFNDIHVAATNVVDTPEFQPDQYSEAQNMQRPFSPSAPSSDLIIPPHAPVPVQSSDEEYIDPYELIINFDNIDEALDFE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2223g00007 379 Gene3D NAC domain 26 182 IPR036093 GO:0003677|GO:0006355
Gabi2223g00007 379 PANTHER NAC TRANSCRIPTION FACTOR 56 16 227 - -
Gabi2223g00007 379 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Gabi2223g00007 379 Pfam No apical meristem (NAM) protein 17 146 IPR003441 GO:0003677|GO:0006355
Gabi2223g00007 379 SUPERFAMILY NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2223g00007 Gabi-Chr2223 217166 219127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2223g00007 16 195 NAC Transcription Factor Family AT1G61110 41.176 1.92e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2223g00007 NAM 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2223g00007 - - tpra:123886946 202.601