Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2223g00006 ATGATACCACGTGGATACAAATTTTGTCCTGATGATGTTGAATTGATCAAGTATTATTTGAAGCCCAAAATCGATGGTCATATAATATATCCTGGCAGGATTCATGATGTTGATGTTTACATGCATTCTCCTCAAGAACTAAATGATACATATAAATACGAAGGAGAGCAACATACATACTTTTTTACTCCAAGAAATAGGAAATATCCTAATGGAAAACGCCCTGATCGAGCTACTGGACAGTTCGGTTTTTGGAAGGCTACTGGAAAAGGGATTCCAATAATATGCAATGACATAGTGATTGGAAATAAAAGGAGTTTGGTATTTTATCAAAAGAAGCCTACAGATGGAGTGAAAGAGGCAGTGAAAACCAATTGGATTATGCAAGAGTTCACTGTTGAAAAAGAGAAAAATCTTGCAAGTTCAAGTACAACTCCTCCCTGCACGATGCAGTTAGATGATTGGGTTTTATGTAAGATTTACAAGACTAAGCATGAGACTGAAAAGCGAGATCGTGAAGAAGTTACAATATCAACAAATGTTGCCAAAAAATGTAAATCCAGTCAACTTTTTGAGGGTCAGTATATGCAAACTCACTTGTCCACAAATGTGGTTGATACTCCACAGTTTGAATTCAATCAAGATGCTCTGCATACACAACCACACTTGTCCACCAATTTAATTGCCTCTCCACAGTGTCAACCCAATCAATATTTTGATATTGATCAATATATGCAAAATCTCATTTCCTCTTCTTCTCCAACCTTAGAGAGTATAATACACGAAAACTCATCTATTCCTTCCCGTTTTTCACTTCCAATGCAATCATCGGAGTTTAATGATTCTTACTTGCAAATGGAGTTTAATGATATCCATGTGGCTGCCACCAATGTGGTTGACACTCCAGAGTTTCAACCCGATCAATATTCTGAGGCACAAAATATGCAAAGGCCATTTTCACCTTCTGCCCCTTCCTCAGACTTGATTATTCCTCCTCATGCTCCAGTTCCTGTGCAATCATCGGATGAGGAGTATATTGATCCATATGAGCTAATAATAAACTTCGATAATATTGATGAAGCTTTGGATTTTGAATAA 1098 0.3698 MIPRGYKFCPDDVELIKYYLKPKIDGHIIYPGRIHDVDVYMHSPQELNDTYKYEGEQHTYFFTPRNRKYPNGKRPDRATGQFGFWKATGKGIPIICNDIVIGNKRSLVFYQKKPTDGVKEAVKTNWIMQEFTVEKEKNLASSSTTPPCTMQLDDWVLCKIYKTKHETEKRDREEVTISTNVAKKCKSSQLFEGQYMQTHLSTNVVDTPQFEFNQDALHTQPHLSTNLIASPQCQPNQYFDIDQYMQNLISSSSPTLESIIHENSSIPSRFSLPMQSSEFNDSYLQMEFNDIHVAATNVVDTPEFQPDQYSEAQNMQRPFSPSAPSSDLIIPPHAPVPVQSSDEEYIDPYELIINFDNIDEALDFE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2223g00006 365 Pfam No apical meristem (NAM) protein 3 132 IPR003441 GO:0003677|GO:0006355
Gabi2223g00006 365 Gene3D NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Gabi2223g00006 365 PANTHER NAC TRANSCRIPTION FACTOR 56 2 214 - -
Gabi2223g00006 365 ProSiteProfiles NAC domain profile. 2 163 IPR003441 GO:0003677|GO:0006355
Gabi2223g00006 365 SUPERFAMILY NAC domain 2 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2223g00006 Gabi-Chr2223 216220 219127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2223g00006 2 181 NAC Transcription Factor Family AT1G61110 41.176 1.52e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2223g00006 NAM 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2223g00006 - - tpra:123886946 201.06