Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2222g00012 ATGGGGGAAGAAACATCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCGGAACCCTTAGCTGGTGCCATAGCTAATGAAGCTATGAACTTGGTTGATGATTGGGTTGAGGAACCTTTTCATAGAATCAGTGAAGCCGTGAGGCGTAGAGCCAGACAACGTTGGCGATGGCGCCATCATCTTCCTGAAGGCAATGTCCACCATATCCAAACTGAACCCTGGTGGCGCCATTTTCGCAACCCCGAAAATATCTCAATGGAAATGAATCAGTTTTTGGTTAATTCTGGCAATGGAAGTGTGTTGCAGGCTGGTGAAGGTAGTGTGGCAGCTGAGGAAAGAGTTGAGGAGGAGGTTCACAAAGTATGTGAAAGTAGAAGTGGTGGTTTTACATTGGATGAGACATTGAAGAAGGAGGATGTTGAAAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCAGTGTTGGTGGGTTTTTTGATTGTAATATTTGTTTGGATCTGGCTAGGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTCTCTATAGATGGCTGCATTTGCATTCTGATGCTAAGGAATGTCCTGTTTGCAAGGGAGAGGTTAGTGTTAAGAGTATTACCCCTATATATGGTCGAGGTAACAATGTCAAAGTTACTGAGGAGGATTTTGCATTGAAAATCCCTCTCAGGCCCAATGCAAGCCATGTCTCCGAGGATTCGACAACGAATCCTCTAAGACAAACCATTCAGAGGAATGCATTTGCTATGCCTATGGAAGAGATGATTCGGCATCTCGGTAGCAGACTTGATCTTACTCAGGATATTGTTCAGCCAAATGAGCTTGACAATGCAAGGGAAACAGCAGAGAGAACTAGTTCCTTGTTGAGTAGGTTTTTGGCAGCTAGAGGTCTGAGGAGAGAGCATAATCTTGGGGCAGCACCCCATGATGATGAAGCGGGTTCGATACAAAACAATGTTGGTAGTACTCCTTTGGTAGAAGATAACCGCAGGGTCCAATCCCTTTTGCGTAGAAGAGCACAAACACATAGAGGGACCCTTTCATCCACTTTGAGTTCTGCTGAAAGGTTCGCTGAGGCCTATTTCCGCAGCTATACATTAGGTAGAAACCAAGAACAACCTCCTCCAATTGAAGACAGGGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTGTCCTTGTCAACATCTTCTTCTAGGAGGAGAAATGATGCTGCAAGAGTGTATGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGACCTGA 1353 0.4545 MGEETSDAMNLDLNLGPGPEPLAGAIANEAMNLVDDWVEEPFHRISEAVRRRARQRWRWRHHLPEGNVHHIQTEPWWRHFRNPENISMEMNQFLVNSGNGSVLQAGEGSVAAEERVEEEVHKVCESRSGGFTLDETLKKEDVEKGGGGGGGGGGSVGGFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVSVKSITPIYGRGNNVKVTEEDFALKIPLRPNASHVSEDSTTNPLRQTIQRNAFAMPMEEMIRHLGSRLDLTQDIVQPNELDNARETAERTSSLLSRFLAARGLRREHNLGAAPHDDEAGSIQNNVGSTPLVEDNRRVQSLLRRRAQTHRGTLSSTLSSAERFAEAYFRSYTLGRNQEQPPPIEDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDAARVYDVDSGDSRAPRRRRLT 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2222g00012 450 CDD RING-HC_AtRMA-like 160 203 - -
Gabi2222g00012 450 SUPERFAMILY RING/U-box 157 215 - -
Gabi2222g00012 450 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Gabi2222g00012 450 MobiDBLite consensus disorder prediction 428 450 - -
Gabi2222g00012 450 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 127 330 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi2222g00012 450 Pfam Zinc finger, C3HC4 type (RING finger) 162 202 - -
Gabi2222g00012 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 255 IPR013083 -
Gabi2222g00012 450 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Gabi2222g00012 450 MobiDBLite consensus disorder prediction 418 450 - -
Gabi2222g00012 450 SMART ring_2 162 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2222g00012 Gabi-Chr2222 224473 226728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2222g00012 1 441 C3H Transcription Factor Family AT3G58030 47.948 6.71e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2222g00012 K10666 - gmx:100811099 561.992