Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2222g00009 ATGGGTAATTGTTGCGTAACGCCATCGTCTGGTGGAAACAACAAGAAGGGAAGGAAGAAGCAGAAGCAGAGGGAAAACCAGTTCGAGGATGGGCCGGGGAACAAGCTGGTGGTGCTGAAGAAGCCCACGGGCCGAGAGATCGGGCTTAGGTACGAGCTGGGCCGGGAGCTTGGGAGAGGGGAATTCGGGATAACGTACCTTTGCATGGATAGGGAAACGAAGGAGCAGTTGGCGTGCAAATCGATATCGAAGAAGAAGTTAAGATCCGCTGTGGATATTGATGATGTGAGGAGGGAGGTTGAGATCATGAGACACATACCTAAACACCCAAACATCGTGACCTTGAAGGATACCTATGAGGATGACAATGATGTCCATCTTGTTATGGAATTGTGTGAAGGTGGGGAGCTTTTCGACCGGATTGTCGCCCGCGGCCATTACACCGAGCGCGCCGCCGCCTTCGTCACCAAGACCATCGTTGAAGTTGTGCAAATGTGCCACAAGCATGGTGTGATGCATCGGGATCTTAAACCTGAGAACTTTTTGTTTGGAAGCAAGAAGGAAACAGCACCTCTGAAGGCTATTGACTTTGGATTGTCAGTTTTCTTTAAACCAGGTGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAGGCGGAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCGCCATTTTGGGCAGAAACTGAACAGGGAGTTGCCCAAGCAATTATACGATCAGTAGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCAAATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTGGATCATCCGTGGTTACAGAATGCAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCAGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTTCAGCTGATGGATACAGGAAATAGAGGCAAGATTAACATTGATGAGCTACGAGAAGGATTGCATAAGCTAGGCCACCAAGTTCCTGAAGGAGATGTCCAAATAATTATGGAAGCTGGTGATTTAGATAAAGATGGGTACCTAGATTATGGAGAGTTTTTAGCCGTTTCTATTCATCTGAGAAAGATGGGCAATGATGAACACCTTCACAAAGCCTTCCAATTTTTTGATCAGAACCAAAGTGGGTATATTGAAATTGAAGAGTTACGTAATGCCTTGGGTGATGAGGTTGATACGAACAGTGAAGAAGTCATTAATGCAATCATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAAGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCGAGAGAGAGGTTTACTAGTCTAAGTCTGAAATTGATGAAGGACGGGTCGTTGGAATCAAACAATGAGAGTAGATGA 1584 0.4432 MGNCCVTPSSGGNNKKGRKKQKQRENQFEDGPGNKLVVLKKPTGREIGLRYELGRELGRGEFGITYLCMDRETKEQLACKSISKKKLRSAVDIDDVRREVEIMRHIPKHPNIVTLKDTYEDDNDVHLVMELCEGGELFDRIVARGHYTERAAAFVTKTIVEVVQMCHKHGVMHRDLKPENFLFGSKKETAPLKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLRRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWPKVSNNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLMQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFQLMDTGNRGKINIDELREGLHKLGHQVPEGDVQIIMEAGDLDKDGYLDYGEFLAVSIHLRKMGNDEHLHKAFQFFDQNQSGYIEIEELRNALGDEVDTNSEEVINAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKDGSLESNNESR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2222g00009 527 ProSiteProfiles Protein kinase domain profile. 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2222g00009 527 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Gabi2222g00009 527 Gene3D - 318 492 - -
Gabi2222g00009 527 SUPERFAMILY Protein kinase-like (PK-like) 50 318 IPR011009 -
Gabi2222g00009 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Gabi2222g00009 527 SMART serkin_6 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2222g00009 527 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Gabi2222g00009 527 Pfam Protein kinase domain 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2222g00009 527 SMART efh_1 356 384 IPR002048 GO:0005509
Gabi2222g00009 527 SMART efh_1 392 420 IPR002048 GO:0005509
Gabi2222g00009 527 SMART efh_1 464 492 IPR002048 GO:0005509
Gabi2222g00009 527 SMART efh_1 428 456 IPR002048 GO:0005509
Gabi2222g00009 527 Gene3D Transferase(Phosphotransferase) domain 1 137 317 - -
Gabi2222g00009 527 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Gabi2222g00009 527 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Gabi2222g00009 527 CDD EFh 428 490 IPR002048 GO:0005509
Gabi2222g00009 527 Pfam EF-hand domain pair 427 490 IPR002048 GO:0005509
Gabi2222g00009 527 Pfam EF-hand domain pair 357 415 IPR002048 GO:0005509
Gabi2222g00009 527 MobiDBLite consensus disorder prediction 1 34 - -
Gabi2222g00009 527 FunFam calcium-dependent protein kinase 13 137 317 - -
Gabi2222g00009 527 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Gabi2222g00009 527 SUPERFAMILY EF-hand 338 515 IPR011992 -
Gabi2222g00009 527 Gene3D Phosphorylase Kinase; domain 1 53 136 - -
Gabi2222g00009 527 CDD STKc_CAMK 50 308 - -
Gabi2222g00009 527 ProSiteProfiles EF-hand calcium-binding domain profile. 352 387 IPR002048 GO:0005509
Gabi2222g00009 527 FunFam Calcium-dependent protein kinase 7 318 493 - -
Gabi2222g00009 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 485 - -
Gabi2222g00009 527 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Gabi2222g00009 527 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Gabi2222g00009 527 FunFam Calcium-dependent protein kinase 1 53 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2222g00009 Gabi-Chr2222 168793 175101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2222g00009 1 526 EF-hand Containing Proteins AT5G19450 78.049 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2222g00009 Pkinase 3.8e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2222g00009 K13412 - gmx:100778471 899.042