Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2222g00008 ATGGAGAAGATGGCACTCACTGTTAACGGTTCTTTATTCTCCACCACACTTCCTAAAACCTCTTCACCACTCTTCTTATCTAACCAATTGTTTGGCCTTCCCTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACCGCCGCTAAACCACGCCTGCAATTTGCTTCAAAGAGCACTACTTATGGCCCCATCAAATGTTCTGTATCTGAAGCCACAGAACCCAAAGCTGAGAAGAAGAGGCAATTGATGAGAAGAGGAGATGTAAGAAACATTGCGATTGTTGCTCACGTTGATCATGGGAAAACAACTCTTGTTGATGCCATGTTGAAACAAACAAAGGTATTCCGTGATAATCAATTTGTACAGGAAAGGATAATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATCACAATCCTAAGTAAAAATACATCTGTATCCTATAAAGACACAAAGATTAATATAATAGATACTCCTGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGCATCTTAAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGCCATGCAGTTGTTGTGGTTGTGAATAAGATAGATAGGCCTACTGCTCGCCCTGAATTTGTTGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCAAGCAGGGTTGACTCCTGAAAATCTGGCTGAAGACCTTGGGCCATTGTTTGAATCCATCATCAGATGCATCCCTGGACCACGTATTGACAAAGATGGCGCACTTCAAATGCTTGTTACGAATATTGAGTACGATGAACATAAAGGGCGCATTGCAATTGGGCGCTTGCAGGCTGGATTTTTAGAAAAAGGCCTGGATGTCAAGATATGTACTTCTGAAGATTCATGTAGGTATGGAAGAATTGGCGAGCTTTACGTGTATGACAAATTTAATAGGGTCCCCGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTACTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTAAATGGGAAGCCGCTACCTTCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATTAACACTGCACCTTTTGTCGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGATAGGCTATCTCGTGAACTTGAACGAAATCTAGCTATGAAAGTTGAAGATGGTGAAACAGCAGATACATTCATTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGACAGTGAATGACAAATTGTTGGAACCTTTTGAGATTGCAACTGTGGAGGTACCTGAAGAGCACATGGGCGCTGTTGTTGAGCTTCTTGGCAAAAGACGAGGGCTAATGTTTGATATGCAAGGAGCTGGATCGGAGGGAACAACGCTACTCAAATATAAGATCCCAACTCGTGGCCTTCTTGGATTACGGAATGCAATTTTAACTGCTTCCAGAGGGACAGCTATTCTCAACACTGTTTTTGATAGCTACGGGCCTTGGGCTGGTGACATTAGTACTCGAGATCTAGGATCACTGGTTGCTTTTGAGGAAGGAGCAAGCACTTCTTATGCAATCGCTAGTTCACAGGAGAGAGGACAAATGTTTATTGCTCCTGGAGTGGAAGTTTACAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGGCTTTGAATGTTTGCAAGAAAAAAGCTGCAACGAATGTACGTTCCAACAAAGAACAAACAGTGATTCTCGATACACCGTTGGATTATAGTCTGGATGACTGCATCGAATACATCCAAGAAGATGAACTGGTAGAGGTCACCCCCCAAAGTATCCGAATGTGCAAGAATCCAAAAGCCACAAACAAAAAAAGGTAG 2046 0.4208 MEKMALTVNGSLFSTTLPKTSSPLFLSNQLFGLPLSSSSSSSSSSSTAAKPRLQFASKSTTYGPIKCSVSEATEPKAEKKRQLMRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVSYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPTARPEFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLTPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGFLEKGLDVKICTSEDSCRYGRIGELYVYDKFNRVPAESVEAGDICAVCGITDIQIGETIADKVNGKPLPSIKVEEPTVKMSFSINTAPFVGREGKYVTSRNLRDRLSRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKTVNDKLLEPFEIATVEVPEEHMGAVVELLGKRRGLMFDMQGAGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTVFDSYGPWAGDISTRDLGSLVAFEEGASTSYAIASSQERGQMFIAPGVEVYKGQIVGIHQRPGDLALNVCKKKAATNVRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKATNKKR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2222g00008 681 FunFam GTP-binding protein TypA 86 282 - -
Gabi2222g00008 681 Gene3D Translation factors 283 383 - -
Gabi2222g00008 681 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 128 143 IPR031157 -
Gabi2222g00008 681 PRINTS GTP-binding elongation factor signature 135 143 IPR000795 GO:0003924|GO:0005525
Gabi2222g00008 681 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Gabi2222g00008 681 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Gabi2222g00008 681 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Gabi2222g00008 681 Pfam Elongation factor Tu GTP binding domain 89 279 IPR000795 GO:0003924|GO:0005525
Gabi2222g00008 681 Gene3D bipa protein 567 677 IPR042116 -
Gabi2222g00008 681 SUPERFAMILY EF-G C-terminal domain-like 482 596 IPR035647 -
Gabi2222g00008 681 CDD BipA_TypA_II 289 382 IPR047042 -
Gabi2222g00008 681 Gene3D - 473 566 - -
Gabi2222g00008 681 NCBIfam small GTP-binding protein domain 90 239 IPR005225 GO:0005525
Gabi2222g00008 681 FunFam GTP-binding protein TypA 390 494 - -
Gabi2222g00008 681 NCBIfam translational GTPase TypA/BipA 89 680 IPR006298 GO:0003924|GO:0005525
Gabi2222g00008 681 FunFam GTP-binding protein TypA 567 653 - -
Gabi2222g00008 681 FunFam GTP-binding protein TypA 283 383 - -
Gabi2222g00008 681 Pfam Elongation factor Tu domain 2 303 372 IPR004161 GO:0005525
Gabi2222g00008 681 Gene3D Elongation Factor G (Translational Gtpase), domain 3 390 673 - -
Gabi2222g00008 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 289 IPR027417 -
Gabi2222g00008 681 CDD BipA_III 389 467 IPR047043 -
Gabi2222g00008 681 CDD BipA_TypA_C 482 561 IPR035651 -
Gabi2222g00008 681 SMART EFG_C_a 479 568 IPR000640 -
Gabi2222g00008 681 Pfam Elongation factor G C-terminus 480 565 IPR000640 -
Gabi2222g00008 681 CDD TypA_BipA 88 281 IPR047041 -
Gabi2222g00008 681 Gene3D - 87 282 IPR027417 -
Gabi2222g00008 681 FunFam GTP-binding protein TypA 473 566 - -
Gabi2222g00008 681 SUPERFAMILY EF-G C-terminal domain-like 387 471 IPR035647 -
Gabi2222g00008 681 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 282 IPR000795 GO:0003924|GO:0005525
Gabi2222g00008 681 SUPERFAMILY Translation proteins 235 383 IPR009000 -
Gabi2222g00008 681 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 82 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2222g00008 Gabi-Chr2222 94974 103456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2222g00008 89 216 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 5.66e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2222g00008 K06207 - gmx:100785222 1184.09