LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2214g00023	ATGCCATTGGCACTGAATTTTAGGGTTTTCCTATTTTTTTATTTTATTTTTTATTTTTGGTTTGTTGAACCAATGGCTTCAAGTTTAAGTGGAGGTGGTGGAAGAACCTATGGGTTTGATTTCGATGTTAAAAAATCTTCATCAACATCAACTATAACATCATTCACATCATCTCCTTCCTCAACAACCATATCAGAAACCACCAGCAACAACTCCCAAAGAGCAATCTCAACCAAAAAACCTAGAACTCCTCGAAAGAGACCGAACCAAACGTACAACGAAGCTGCCACGCTCCTTTCCACAGCGTACCCGAACCTCTTCTCCACCGAAAACCTCAAAAAACCAGGCAGATTCACCAAACCAATAACGGAAACGACAAATGAATCATCGGAATTGTTTTTGCCATTCAGAGCCTATGGTTATCACAACGACGACCATTTCCTCTTCCAAAATAAACCCACTTTTGATAACAAGGTCTTGAAGCCCCGCACGTGCCATGGCACGTGCTCAGGGGAGATTACCTCCAGAATGGTGAATTCCGATGAATTGGAGTATGATTCCGGTGAAGGCTTCGATTGCGAATCGATTCTTGATGAGGAAATTGAGGAAGGGATCGATAGCATCATGGGGAGCAGTGTCGATGACGTCAATGGCGGCGCTTCGTGTTACCATGGCGGCGGCGGCCAGCGGCTGAGTACGTCGTTTGGTTTTGGCGGGAAATTCAGTTGGGTGAGGGCTCTCCGGCAAGTTGATGACGCGAACTGGTGGAATTTTCCGGCGGTTGATATGCTTGAAATCTCGCCGGGAGTGAAGAACACTCCGACGGTGGCGGCGGCTGCGGAGAAGAAGAAGAAGAAGAAGAAGGCGGTGAAACCAAAAGTGGAATTGAGGGACTCGAGTCAGGGTTTTTTATTGAAATTGAATTACGACGATGTTTTGAATGCGTGGTCGGACCGGGGGTCGCCGTTCGCTGATGATTGCTCCGGCTCTGGTTTGCCGGGAAATGACTTCACTGACCAAATAGATTTATTCGCAAACGGAGCAATGAGAGAAGCTAGTATGCTGCGCTACAAAGAGAAGCGCCGTACACGCCTCTCTTCTAAGAAGTTAATCAGATATCAGGTCAGGAAAGTCAATGCAGATCAACGGCCCAGAATCAAGGGAAGATTTATTGGGAGGGTGAATTCTAGCCCTGAAATGCACAAAGATGATTAG	1215	0.4642	MPLALNFRVFLFFYFIFYFWFVEPMASSLSGGGGRTYGFDFDVKKSSSTSTITSFTSSPSSTTISETTSNNSQRAISTKKPRTPRKRPNQTYNEAATLLSTAYPNLFSTENLKKPGRFTKPITETTNESSELFLPFRAYGYHNDDHFLFQNKPTFDNKVLKPRTCHGTCSGEITSRMVNSDELEYDSGEGFDCESILDEEIEEGIDSIMGSSVDDVNGGASCYHGGGGQRLSTSFGFGGKFSWVRALRQVDDANWWNFPAVDMLEISPGVKNTPTVAAAAEKKKKKKKAVKPKVELRDSSQGFLLKLNYDDVLNAWSDRGSPFADDCSGSGLPGNDFTDQIDLFANGAMREASMLRYKEKRRTRLSSKKLIRYQVRKVNADQRPRIKGRFIGRVNSSPEMHKDD	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2214g00023	404	MobiDBLite	consensus disorder prediction	50	89	-	-
	Gabi2214g00023	404	ProSiteProfiles	CCT domain profile.	350	393	IPR010402	GO:0005515
	Gabi2214g00023	404	PANTHER	CCT MOTIF FAMILY PROTEIN, EXPRESSED	36	396	-	-
	Gabi2214g00023	404	MobiDBLite	consensus disorder prediction	50	78	-	-
	Gabi2214g00023	404	Pfam	CCT motif	350	391	IPR010402	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2214g00023	Gabi-Chr2214	243895	247830	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2214g00023	293	393	C2C2-CO-like Transcription Factor Family	AT1G25440	41.463	6.79e-17	80.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Gabi2214g00023		CCT	1.5e-14	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2214g00023	-		-	gmx:100784788	337.806