Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2214g00022 | ATGCGGGAAACTGAGAAGTTGAAAAGCAAAGGAAATAAAAAATCCAGTCACTCAAAGGAACAGACAGGACCAAAGCTAGATTCATCGAGATTCAAAACAAGTAGTGCAAAATATTGCAGGAAGAAACATAAACTAAAATCAAAATCTCATAAACTCAGAGTTGGTACAAACACATCAAGGAGGACAGTTACTGATTCTTCCATCAAGACACCAATCAAGGATTCTTCAAATAAAAAATTAATTATTAGACAAAATCTGCATAAAACTGATGGGAAATCTTCACTGATGCCCTCTTCAACAAAGCTACAAGAATCAAAAGTTTTTCTTAGTTCTAGAAAAGAGGGGAAAGATGTTGATGAGGAGGCAAAGATTCAAAAACATAAGAGAAGGAGAAAGAAGAGAAGAAAAAGGGATAATGTGGATCTTGATGATGCTTCACGCCTGCTGAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCTGAAAAGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCCATTCGCCAGCTGGATTCTCTTAGTTCGTTGGGTAGCATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAATTTGCAAGCTGCGTGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGTACATGCAATCGCGCTTTTCACCAAAGATGTCTCAATCCTCCTTTAGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTATTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATACCTGATGGTGACACTTCATTACTAAATCAAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTATAATCCAGAGAGGAAAGAAGACAGTCACAGCATCCACACGGAAGGAATTGATGATAATGCATCCGATGATTTAAGCAGTTATTCTGGTCTTTGGTCTTTGAGTGGTGAATGTTCTCCAGTAGATGAAGGCATTAGCCATGAATACTGTTCTGTTAATAGCTACATAGATTCTGATGAATCTGGCGAATTAGCGGGTGGACGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCCATATGAACAAGTAAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTGCATGAAAGTGAGAATAAATATCCCAATAATGAGAACAATGACAGAATAAGAGGGAATTCTTCAGCCGTACAAATAAGAAGATCCTGTTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGCTTTTGCAGAGAATGAGCTTCCTCCGAGATCCGTGAAGGAAGGTCTTTCGAAAGAGTTGGGAATTGATGCGGGGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAAGTATCAAGGAGGAGGAGGAGAACAGCTTCAGAGTTTCACTTCTAAGACCTCAAAGGATTCTAGATTACAAAATGTGGAGAAAACTGAGCCTTTGAAATCAAGAGTCTCCAAAATAACTGTGATTCATTCCCAGAAGAATGGTAAAAATGTCATTGGCAAAGAGAAAACAAAGTCATCCAGCAATCCTTTGAAGAAAAGGAAACTAGAAATATCTCCACCCTTGACAAGAGAAAATGGCAACAAGGACTCCATGGAGATCAGTGATGACGTGAGCTTGAAGAAACTGTTGAAAAAAAGGAAAAGGAGGGTGAATATTATATTTGGAGGAGACTGTAAGGTAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATTAAACTTGATAGTATGAAGCAAAAATTAACTGAAGTTCAAAATTACAGAGCCAAAGGTTCAGATAAACTCTATTCAAATGAACCGTCTATTATATATGTACCCATAGCTGAGTTAAGGGAAAAGGATGAACAATAA | 2163 | 0.3883 | MRETEKLKSKGNKKSSHSKEQTGPKLDSSRFKTSSAKYCRKKHKLKSKSHKLRVGTNTSRRTVTDSSIKTPIKDSSNKKLIIRQNLHKTDGKSSLMPSSTKLQESKVFLSSRKEGKDVDEEAKIQKHKRRRKKRRKRDNVDLDDASRLLRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIRQLDSLSSLGSIEDSVIAPDGSVYHEHIFCAICKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKYCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAAIPDGDTSLLNQEEEWPSDDPEDDDYNPERKEDSHSIHTEGIDDNASDDLSSYSGLWSLSGECSPVDEGISHEYCSVNSYIDSDESGELAGGRRQRKAVDYKKLYDEMFGKDAPPYEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNENNDRIRGNSSAVQIRRSCFRIPHDAVEKLRQAFAENELPPRSVKEGLSKELGIDAGKVSKWFKNARYLALKTRKYQGGGGEQLQSFTSKTSKDSRLQNVEKTEPLKSRVSKITVIHSQKNGKNVIGKEKTKSSSNPLKKRKLEISPPLTRENGNKDSMEISDDVSLKKLLKKRKRRVNIIFGGDCKVAELEFERLSKVKIKLDSMKQKLTEVQNYRAKGSDKLYSNEPSIIYVPIAELREKDEQ | 720 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 431 | 457 | - | - | |
Gabi2214g00022 | 720 | SUPERFAMILY | FYVE/PHD zinc finger | 227 | 292 | IPR011011 | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 596 | 632 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 554 | 569 | - | - | |
Gabi2214g00022 | 720 | ProSitePatterns | Zinc finger PHD-type signature. | 236 | 287 | IPR019786 | - | |
Gabi2214g00022 | 720 | SUPERFAMILY | Homeodomain-like | 487 | 547 | IPR009057 | - | |
Gabi2214g00022 | 720 | Pfam | PHD-finger | 235 | 290 | IPR019787 | - | |
Gabi2214g00022 | 720 | Pfam | Homeodomain | 499 | 543 | IPR001356 | GO:0003677 | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 598 | 622 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 107 | 125 | - | - | |
Gabi2214g00022 | 720 | ProSiteProfiles | 'Homeobox' domain profile. | 488 | 548 | IPR001356 | GO:0003677 | |
Gabi2214g00022 | 720 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 12 | 718 | - | - | |
Gabi2214g00022 | 720 | CDD | homeodomain | 496 | 543 | IPR001356 | GO:0003677 | |
Gabi2214g00022 | 720 | ProSiteProfiles | Zinc finger PHD-type profile. | 233 | 290 | IPR019787 | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 56 | 79 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 332 | 346 | - | - | |
Gabi2214g00022 | 720 | FunFam | pathogenesis-related homeodomain protein | 490 | 554 | - | - | |
Gabi2214g00022 | 720 | Gene3D | - | 490 | 552 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 322 | 366 | - | - | |
Gabi2214g00022 | 720 | FunFam | pathogenesis-related homeodomain protein-like | 227 | 287 | - | - | |
Gabi2214g00022 | 720 | SMART | PHD_3 | 235 | 288 | IPR001965 | - | |
Gabi2214g00022 | 720 | CDD | PHD_PRHA_like | 235 | 287 | IPR045876 | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 1 | 139 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 347 | 364 | - | - | |
Gabi2214g00022 | 720 | SMART | HOX_1 | 490 | 552 | IPR001356 | GO:0003677 | |
Gabi2214g00022 | 720 | MobiDBLite | consensus disorder prediction | 553 | 579 | - | - | |
Gabi2214g00022 | 720 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 284 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2214g00022 | Gabi-Chr2214 | 233410 | 241311 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2214g00022 | 134 | 552 | Homeobox Transcription Factor Family | AT4G29940 | 55.023 | 2.84e-151 | 457 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-PHD | Gabi2214g00022 | Homeodomain | 4e-06 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2214g00022 | - | - | gmx:100787118 | 1067.76 |