Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2214g00022 ATGCGGGAAACTGAGAAGTTGAAAAGCAAAGGAAATAAAAAATCCAGTCACTCAAAGGAACAGACAGGACCAAAGCTAGATTCATCGAGATTCAAAACAAGTAGTGCAAAATATTGCAGGAAGAAACATAAACTAAAATCAAAATCTCATAAACTCAGAGTTGGTACAAACACATCAAGGAGGACAGTTACTGATTCTTCCATCAAGACACCAATCAAGGATTCTTCAAATAAAAAATTAATTATTAGACAAAATCTGCATAAAACTGATGGGAAATCTTCACTGATGCCCTCTTCAACAAAGCTACAAGAATCAAAAGTTTTTCTTAGTTCTAGAAAAGAGGGGAAAGATGTTGATGAGGAGGCAAAGATTCAAAAACATAAGAGAAGGAGAAAGAAGAGAAGAAAAAGGGATAATGTGGATCTTGATGATGCTTCACGCCTGCTGAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCTGAAAAGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCCATTCGCCAGCTGGATTCTCTTAGTTCGTTGGGTAGCATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAATTTGCAAGCTGCGTGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGTACATGCAATCGCGCTTTTCACCAAAGATGTCTCAATCCTCCTTTAGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTATTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATACCTGATGGTGACACTTCATTACTAAATCAAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTATAATCCAGAGAGGAAAGAAGACAGTCACAGCATCCACACGGAAGGAATTGATGATAATGCATCCGATGATTTAAGCAGTTATTCTGGTCTTTGGTCTTTGAGTGGTGAATGTTCTCCAGTAGATGAAGGCATTAGCCATGAATACTGTTCTGTTAATAGCTACATAGATTCTGATGAATCTGGCGAATTAGCGGGTGGACGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCCATATGAACAAGTAAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTGCATGAAAGTGAGAATAAATATCCCAATAATGAGAACAATGACAGAATAAGAGGGAATTCTTCAGCCGTACAAATAAGAAGATCCTGTTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGCTTTTGCAGAGAATGAGCTTCCTCCGAGATCCGTGAAGGAAGGTCTTTCGAAAGAGTTGGGAATTGATGCGGGGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAAGTATCAAGGAGGAGGAGGAGAACAGCTTCAGAGTTTCACTTCTAAGACCTCAAAGGATTCTAGATTACAAAATGTGGAGAAAACTGAGCCTTTGAAATCAAGAGTCTCCAAAATAACTGTGATTCATTCCCAGAAGAATGGTAAAAATGTCATTGGCAAAGAGAAAACAAAGTCATCCAGCAATCCTTTGAAGAAAAGGAAACTAGAAATATCTCCACCCTTGACAAGAGAAAATGGCAACAAGGACTCCATGGAGATCAGTGATGACGTGAGCTTGAAGAAACTGTTGAAAAAAAGGAAAAGGAGGGTGAATATTATATTTGGAGGAGACTGTAAGGTAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATTAAACTTGATAGTATGAAGCAAAAATTAACTGAAGTTCAAAATTACAGAGCCAAAGGTTCAGATAAACTCTATTCAAATGAACCGTCTATTATATATGTACCCATAGCTGAGTTAAGGGAAAAGGATGAACAATAA 2163 0.3883 MRETEKLKSKGNKKSSHSKEQTGPKLDSSRFKTSSAKYCRKKHKLKSKSHKLRVGTNTSRRTVTDSSIKTPIKDSSNKKLIIRQNLHKTDGKSSLMPSSTKLQESKVFLSSRKEGKDVDEEAKIQKHKRRRKKRRKRDNVDLDDASRLLRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIRQLDSLSSLGSIEDSVIAPDGSVYHEHIFCAICKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKYCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAAIPDGDTSLLNQEEEWPSDDPEDDDYNPERKEDSHSIHTEGIDDNASDDLSSYSGLWSLSGECSPVDEGISHEYCSVNSYIDSDESGELAGGRRQRKAVDYKKLYDEMFGKDAPPYEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNENNDRIRGNSSAVQIRRSCFRIPHDAVEKLRQAFAENELPPRSVKEGLSKELGIDAGKVSKWFKNARYLALKTRKYQGGGGEQLQSFTSKTSKDSRLQNVEKTEPLKSRVSKITVIHSQKNGKNVIGKEKTKSSSNPLKKRKLEISPPLTRENGNKDSMEISDDVSLKKLLKKRKRRVNIIFGGDCKVAELEFERLSKVKIKLDSMKQKLTEVQNYRAKGSDKLYSNEPSIIYVPIAELREKDEQ 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 431 457 - -
Gabi2214g00022 720 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 596 632 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 35 55 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 554 569 - -
Gabi2214g00022 720 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Gabi2214g00022 720 SUPERFAMILY Homeodomain-like 487 547 IPR009057 -
Gabi2214g00022 720 Pfam PHD-finger 235 290 IPR019787 -
Gabi2214g00022 720 Pfam Homeodomain 499 543 IPR001356 GO:0003677
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 598 622 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 107 125 - -
Gabi2214g00022 720 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Gabi2214g00022 720 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 12 718 - -
Gabi2214g00022 720 CDD homeodomain 496 543 IPR001356 GO:0003677
Gabi2214g00022 720 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 56 79 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 332 346 - -
Gabi2214g00022 720 FunFam pathogenesis-related homeodomain protein 490 554 - -
Gabi2214g00022 720 Gene3D - 490 552 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 322 366 - -
Gabi2214g00022 720 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Gabi2214g00022 720 SMART PHD_3 235 288 IPR001965 -
Gabi2214g00022 720 CDD PHD_PRHA_like 235 287 IPR045876 -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 1 139 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 87 106 - -
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 347 364 - -
Gabi2214g00022 720 SMART HOX_1 490 552 IPR001356 GO:0003677
Gabi2214g00022 720 MobiDBLite consensus disorder prediction 553 579 - -
Gabi2214g00022 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2214g00022 Gabi-Chr2214 233410 241311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2214g00022 134 552 Homeobox Transcription Factor Family AT4G29940 55.023 2.84e-151 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gabi2214g00022 Homeodomain 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2214g00022 - - gmx:100787118 1067.76