Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi21g00004 ATGGCAAACTGTCACCGGAACAACGTCGGATCTCTCGTACTCGACAACCACCACACTACCAAGACCACCACCGTTGGCAGTCACTTCCGCATATGGAACTCTCTGTCCGCCGCCACCATTCGCCGCATCATTTTCGACTCCGTCAGCTGCGGTGCCAGCTCCCGTTACAACCACCGTCGCCGCGACGCTGACGAATTCGCCTCTGCCTCCTCGACGGCGAGATCGGACTCTTTCTCCTCCGACGAGAAGCGTCAACAACAGCAGCAGAAACACGAGCATAGGTCGAGGCAGAATGCGGGGTCGGAGAAGCTATCGGATCTCCTGAACATGGCGGAGTTTGAAGCGGAAGCGGAAACGAAGAAGAAGGAGGAGGCGCTGGAGGAGCTGAAGCAGCTGGTGAAGGAGTTGCAGCAGGGAGAGGATTTGGCGAAGCGGCGAGCGGCTGCGGCCACCGTGAGGCTTCTCGCTAAGGAGGATTTGGAAGTTAGAGGAACGCTCGCAATGCTTGGAGCGATTCCTCCTCTCGTCGCAATGCTCGATTCCGAAGACATTGATTCTCATATCGCTTCGCTCTATGCGTTGCTCAATCTCGGAATCGGAAATGATGCTAATAAAGCAGCCATTGTCAAAGTTGGCTCTGTTCACAAGATGCTCGAGCTCATTGAATCTCCAGATGGTTTAGATTCGTCGGTCTCTGAAGCAGTTGTTGCAAATTTCCTTGGATTAAGTGCTTTGGATTCGAACAAGCCAATAATTGGATCATCGGCTGCTATTCCATTCCTTGTTAGTACCCTTCTGAGTTTAGATAATAAAAGTAGCCCCCAAGCCCAGCAAGATGCTCTCCGAGCACTGTACAATCTTTCAATTTTCCCAGCCAATATTCCATTCATTTTGGAAACCGATTTGGTCCCATTCCTGATAAACTTAATAGGAGACATGGAAGTAACTGAAAGAACCCTCTCAATCCTTAGCAATTTGGTATCAATTCGAGAGGGTAGAAAAGCTATCAGTGCTGTCCCTGATGCTTTCCCTATCCTGGTGGATGTATTGAATTGGACAGATTCACCACAATGCCAGGAAAAGACATCTTACATTTTGATGGTCATGGCACACAAATCCTATGGTGACAAGCAGGCCATGATAGAGGCAGGGATTATGTCATCACTGCTTGAGTTGTCGCTTCTGGGTACCACATTGGCTCAGAAAAGGGCCTCGAGGATATTGGAATGTTTGAGGACAGACAAAGGGAAGCAGGTTTCTGGGAGCTATGCAACTGTTTCTGCTCCTATTTGTGGCTCTTCATCATCTTGTCCAAAGCCAGATGGAGGAGGAAAAGAGTGTTTGGAGGAGGAGGAAGAAATGATGAGTGAAGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTAAAGAGGGCCAACTTGCCTCAAGATATAGTTCCATCCGATCATTTTAAGTCACTCACTTCAAGTTCGACTTCAAAGAGCCTGCCATTTTGA 1524 0.4849 MANCHRNNVGSLVLDNHHTTKTTTVGSHFRIWNSLSAATIRRIIFDSVSCGASSRYNHRRRDADEFASASSTARSDSFSSDEKRQQQQQKHEHRSRQNAGSEKLSDLLNMAEFEAEAETKKKEEALEELKQLVKELQQGEDLAKRRAAAATVRLLAKEDLEVRGTLAMLGAIPPLVAMLDSEDIDSHIASLYALLNLGIGNDANKAAIVKVGSVHKMLELIESPDGLDSSVSEAVVANFLGLSALDSNKPIIGSSAAIPFLVSTLLSLDNKSSPQAQQDALRALYNLSIFPANIPFILETDLVPFLINLIGDMEVTERTLSILSNLVSIREGRKAISAVPDAFPILVDVLNWTDSPQCQEKTSYILMVMAHKSYGDKQAMIEAGIMSSLLELSLLGTTLAQKRASRILECLRTDKGKQVSGSYATVSAPICGSSSSCPKPDGGGKECLEEEEEMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi21g00004 507 SMART arm_5 159 199 IPR000225 GO:0005515
Gabi21g00004 507 SMART arm_5 290 328 IPR000225 GO:0005515
Gabi21g00004 507 SMART arm_5 201 244 IPR000225 GO:0005515
Gabi21g00004 507 SMART arm_5 245 289 IPR000225 GO:0005515
Gabi21g00004 507 MobiDBLite consensus disorder prediction 60 103 - -
Gabi21g00004 507 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 507 - -
Gabi21g00004 507 Coils Coil 108 146 - -
Gabi21g00004 507 Coils Coil 445 468 - -
Gabi21g00004 507 MobiDBLite consensus disorder prediction 77 100 - -
Gabi21g00004 507 Gene3D - 128 266 IPR011989 -
Gabi21g00004 507 Gene3D - 267 426 IPR011989 -
Gabi21g00004 507 SUPERFAMILY ARM repeat 128 411 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi21g00004 Gabi-Chr21 21920 24952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi21g00004 118 415 U-box Gene Family AT2G23140 32.333 7.26e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi21g00004 - - psat:127098188 664.07