Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2197g00022 ATGTGTGGTGGTTCTATTATCTCCGACTACATTCCGGCGGCGGGGGGATTGGCTCGCCCTGTGACCGCCGAAATTCTGTGGCCACATTTGAGGAAACCCAATTTGGGGAAGCATTTCTCGAAGCCACTTTTGTTGGATGATGACTTCGAGGCTAGTTTCAGAGAGTTTAAGGATGACTCTGACATGGACGACGAGGAGGAGGATGATGCTGATGTCCTGGTCGGGGTTAAGGCCTTTGGCTTTGCTCCTTCCAAGCCTTCCAAATTCCTCTCTCGTGGATTTGCAGCTGCAAAGTCTGCGGAATCAAATGGGCAAGCTGAGCAGTCTGGCAAGAGAAAGAGGAAGAATCAGTATCGGGGAATCCGTCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGGGCTTATGATGCTGAAGCTAGGAGGATCCGCGGCAACAAAGCCAAGGTGAATTTCCCTGATGAGCCAGCAAGTGGTTCAGCAAAACGTGTTAAGGCAAATCCGGAGAAGCAGCTGTTGAAGGAAAAGCTCAACTCTGTTAAGCCAAAGATGAACCAGATGTTCAATTTTGGTAATGGTCTGGAGGACTACTACTTCTGTATGGATCCAGTGGAACAGAAACCACTGGTTAACCAGGATGCTAACATGGGGCTCTACCCTGGAAATGGACTTGGGGTCTCACCCCTTACTCCATCTGCTGATGTTACTGCTTATCTCAGTTCTGAGCATTCGAGCAATTCATTCGATTATTCTGACCTTGGACGGGGTGATCAGGGTCCTAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGAAGGTGAATCTCAATTTGTGCAGGGTGCTGCTGCTGATCAGATGAAAAACCTGCAGTCTAACTCTCAGGATCTGATATACTTGCAAGATGATTCTGCAAAGACACTATCTGAGGAGCTTGTGGATATCGAATCCCAGCTGAAGTTCTTTGACACCCCTTATCTTGATGGGAGCTGGGATGATGCTTCATTGGCATCCTTCCTTGGTGGAGATGCAACTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCAATGGCAGGTGGAGTTTTCTAA 1173 0.4876 MCGGSIISDYIPAAGGLARPVTAEILWPHLRKPNLGKHFSKPLLLDDDFEASFREFKDDSDMDDEEEDDADVLVGVKAFGFAPSKPSKFLSRGFAAAKSAESNGQAEQSGKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPDEPASGSAKRVKANPEKQLLKEKLNSVKPKMNQMFNFGNGLEDYYFCMDPVEQKPLVNQDANMGLYPGNGLGVSPLTPSADVTAYLSSEHSSNSFDYSDLGRGDQGPKTPEISSMLSAPLEGESQFVQGAAADQMKNLQSNSQDLIYLQDDSAKTLSEELVDIESQLKFFDTPYLDGSWDDASLASFLGGDATQDGGNPMNLWSFDDLPSMAGGVF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2197g00022 390 PANTHER DNA-BINDING DOMAIN 84 262 IPR044808 GO:0003700|GO:0009873
Gabi2197g00022 390 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Gabi2197g00022 390 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Gabi2197g00022 390 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Gabi2197g00022 390 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Gabi2197g00022 390 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Gabi2197g00022 390 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Gabi2197g00022 390 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Gabi2197g00022 390 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Gabi2197g00022 390 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Gabi2197g00022 390 MobiDBLite consensus disorder prediction 99 121 - -
Gabi2197g00022 390 MobiDBLite consensus disorder prediction 266 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2197g00022 Gabi-Chr2197 225895 229328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2197g00022 1 390 AP2-EREBP Transcription Factor Family AT3G14230 45.564 4.00e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2197g00022 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2197g00022 K09286 - gmx:100818646 491.115