Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2197g00008 ATGGCCGCCGCCACCAATTCCGCCGCAGCCCCGCCGCGCGAGCTATCACAGAAGGAAGCCGACATCCAGTTGATGTTGGCGGCGGATGTCCATCTCGGTACCAAAAACTGCGACTTTCAGATGGAACGTTACATCTTCAAGCGCCGCAACGATGGTATTTATATCATAAATCTTGGTAAGACTTGGGAGAAGCTTCAATTAGCTGCCAGGGTTATTGTTGCCATTGAGAACCCTCAGGACATAATTGTCCAGTCTGCTAGGCCTTATGGACAGAGAGCGGTTCTTAAGTTTGCTCAGTACACTGGCGCTCATGCAATTGCTGGGAGGCACACTCCTGGCACATTCACGAATCAAATGCAAACTTCATTCAGTGAGCCTCGTCTTCTTATTCTAACAGATCCAAGAACTGATCATCAGCCTATTAAGGAAGCTGCTCTTGGAAATATTCCAACCATTGCTTTCTGTGACACTGATTCTCCTATGAGGCATGTTGACATTGGAATTCCAGCCAATAACAAGGGGAAACACAGCATTGGTTGTCTCTTTTGGCTTCTGGCAAGGATGGTGTTACAGATGCGTGGTACTATTCGCCCTGGTCTTAAGTGGGATGTGATGGTGGATTTATTCTTCCATAGGGACCCAGAGGAACCCAAGGCACAAGAGCAGGATGAAGCTCCTGCAGGTGATTATCCCATCACCGACTTCAATGCAGGCGCTCTTACTGCTGATGGACAGTGGCCTGCTGCAATTGATCAGTCATGGACTGATACAGTTGCACAACCTATTGCAGCAGCTCCTGGTGTCAACTGGGCAGCCCCAGAAACTGGTGCAGTTGCAGTTGCAGCAGGAGGAGACTGGGGTGACTCAGTAGCCACTCCACAACAAATTCCTGTTGTTATTGGAGAGGAGACTGTGCACCCAACTGGGTGGGAATGA 936 0.4947 MAAATNSAAAPPRELSQKEADIQLMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRHVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFHRDPEEPKAQEQDEAPAGDYPITDFNAGALTADGQWPAAIDQSWTDTVAQPIAAAPGVNWAAPETGAVAVAAGGDWGDSVATPQQIPVVIGEETVHPTGWE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2197g00008 311 Gene3D - 21 226 - -
Gabi2197g00008 311 FunFam 40S ribosomal protein SA 21 227 - -
Gabi2197g00008 311 NCBIfam 30S ribosomal protein S2 18 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gabi2197g00008 311 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Gabi2197g00008 311 Hamap 40S ribosomal protein SA [rps-0]. 9 249 IPR027498 GO:0003735|GO:0006412|GO:0015935
Gabi2197g00008 311 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gabi2197g00008 311 PANTHER 40S RIBOSOMAL PROTEIN SA 12 296 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2197g00008 4 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.145 2.76e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2197g00008 K02998 - gmx:100805318 548.51