Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2194g00017 ATGGCGCCAATCCTTCAAAGCTCTCAGCCATGGGTTGAGAAATACCGGCCAAAGCAAGTGAAAGACGTTGCTCACCAAGACGAAGTTTGCCCTCACATGCTCTTCTATGGTCCTCCCGGCACCGGAAAAACCACTACCGCACTTGCAATCGCGCATCAACTTTTCGGGCCTGAACTCTACAAGTCTAGGGTGCTGGAGCTTAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGCTGTGGCTGTTGGCACTCATCAGCGTAAGAATGGTTATCCTTGCCCGCCATATAAGATTATTGTTCTAGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCTTTGAGGCGTACGATGGAAACTTACTCTAAAGTTACGAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCGCTGTCAGAAGAAATTATGAGCAGCCGAATATTATACATCTGTAAAGAAGAAGGACTCTATCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCTGCTCGCTTATTTGGATCTTCCATTTCTTCAAAGGATCTGATTTCTGTGTCTGGGGTTGTTCCAGCAGAGGTTGTGGAGGCACTTCTTAAATCATGCAAAAGTGGTAATTTTGATTTAGCCAACAAGGAAGTCAATAATTTCATCGCAGAGGGATATCCAGCCTCTCAGATGCTAACTCAGTTATTTGAGGCCATTATTGAAGACGACATATCAGATGAACAGAAGGCAAGAATATTCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGATGTGGTCAGCAATACCATGCAAGCTTTTTGTAACATGCCAGAAGGATTTGCATACGAAGGTTAA 990 0.4333 MAPILQSSQPWVEKYRPKQVKDVAHQDEVCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTHQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLYLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPAEVVEALLKSCKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIIEDDISDEQKARIFKKLGEADKCLVDGADEYLQLLDVVSNTMQAFCNMPEGFAYEG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2194g00017 329 Pfam Replication factor C C-terminal domain 229 312 IPR013748 -
Gabi2194g00017 329 SUPERFAMILY post-AAA+ oligomerization domain-like 228 312 IPR008921 GO:0003677|GO:0006260
Gabi2194g00017 329 FunFam Replication factor C subunit 4 164 227 - -
Gabi2194g00017 329 CDD HLD_clamp_RFC 162 221 - -
Gabi2194g00017 329 FunFam Replication factor C subunit 5 3 162 - -
Gabi2194g00017 329 Pfam ATPase family associated with various cellular activities (AAA) 33 160 IPR003959 GO:0005524|GO:0016887
Gabi2194g00017 329 Gene3D - 164 227 - -
Gabi2194g00017 329 CDD AAA 31 154 - -
Gabi2194g00017 329 Gene3D - 3 161 IPR027417 -
Gabi2194g00017 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 209 IPR027417 -
Gabi2194g00017 329 FunFam Replication factor C subunit 4 228 316 - -
Gabi2194g00017 329 Gene3D - 228 316 - -
Gabi2194g00017 329 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 308 - -
Gabi2194g00017 329 SMART AAA_5 29 162 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2194g00017 Gabi-Chr2194 153524 158149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2194g00017 1 325 Core DNA Replication Machinery Family AT1G21690 76.401 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2194g00017 K10755 - gmx:100798331 592.423