Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2194g00015 ATGGCGCCAATCCTTCAAAGCTCTCAGCCATGGGTTGAGAAATACCGGCCAAAGCAAGTGAAAGACGTTGCTCACCAAGACGAAGTTGTTCGAGTACTCACAAACACCCTCGAAACCGGAAGCTGCCCTCACATGCTCTTCTATGGTCCTCCCGGCACCGGAAAAACCACTACCGCACTTGCAATCGCGCATCAACTTTTCGGGGTGCTGGAGCTTAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGCTGTGGCTGTTGGCACTCATCAGCGTAAGAATGGTTATCCTTGCCCGCCATATAAGATTATTGTTCTAGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCTTTGAGGCGTACGATGGAAACTTACTCTAAAGTTACGAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCGCTGTCAGAAGAAATTATGAGCAGCCGAATATTATACATCTGTAAAGAAGAAGGACTCTATCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCTGCTCGCTTATTTGGATCTTCCATTTCTTCAAAGGATCTGATTTCTGTGTCTGGGGTTGTTCCAGCAGAGGTTGTGGAGGCACTTCTTAAATCATGCAAAAGTGGTAATTTTGATTTAGCCAACAAGGAAGTCAATAATTTCATCGCAGAGGGATATCCAGCCTCTCAGATGCTAACTCAGTTATTTGAGGCCATTATTGAAGACGACATATCAGATGAACAGAAGGCAAGAATATTCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGATGTGGTCAGCAATACCATGCAAGCTTTTTGTAACATGCCAGAAGGATTTGCATACGAAGGTTAA 1005 0.4358 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGVLELNASDDRGINVVRTKIKDFAAVAVGTHQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLYLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPAEVVEALLKSCKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIIEDDISDEQKARIFKKLGEADKCLVDGADEYLQLLDVVSNTMQAFCNMPEGFAYEG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2194g00015 334 CDD HLD_clamp_RFC 167 226 - -
Gabi2194g00015 334 Gene3D - 3 166 IPR027417 -
Gabi2194g00015 334 FunFam Replication factor C subunit 5 3 167 - -
Gabi2194g00015 334 FunFam Replication factor C subunit 4 233 321 - -
Gabi2194g00015 334 FunFam Replication factor C subunit 4 169 232 - -
Gabi2194g00015 334 Pfam Replication factor C C-terminal domain 234 317 IPR013748 -
Gabi2194g00015 334 Gene3D - 169 232 - -
Gabi2194g00015 334 Gene3D - 233 321 - -
Gabi2194g00015 334 SMART AAA_5 41 167 IPR003593 GO:0016887
Gabi2194g00015 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 226 IPR027417 -
Gabi2194g00015 334 SUPERFAMILY post-AAA+ oligomerization domain-like 233 317 IPR008921 GO:0003677|GO:0006260
Gabi2194g00015 334 Pfam ATPase family associated with various cellular activities (AAA) 45 165 IPR003959 GO:0005524|GO:0016887
Gabi2194g00015 334 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 313 - -
Gabi2194g00015 334 CDD AAA 26 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2194g00015 Gabi-Chr2194 153524 158229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2194g00015 1 330 Core DNA Replication Machinery Family AT1G21690 80.723 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2194g00015 K10755 - gmx:100798331 602.053