Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2194g00014 ATGGCGCCAATCCTTCAAAGCTCTCAGCCATGGGTTGAGAAATACCGGCCAAAGCAAGTGAAAGACGTTGCTCACCAAGACGAAGTTGTTCGAGTACTCACAAACACCCTCGAAACCGGAAGCTGCCCTCACATGCTCTTCTATGGTCCTCCCGGCACCGGAAAAACCACTACCGCACTTGCAATCGCGCATCAACTTTTCGGGCCTGAACTCTACAAGTCTAGGGTGCTGGAGCTTAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGCTGTGGCTGTTGGCACTCATCAGCGTAAGAATGGTTATCCTTGCCCGCCATATAAGATTATTGTTCTAGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCTTTGAGGCGTACGATGGAAACTTACTCTAAAGTTACGAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCGCTGTCAGAAGAAATTATGAGCAGCCGAATATTATACATCTGTAAAGAAGAAGGACTCTATCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCTGCTCGCTTATTTGGATCTTCCATTTCTTCAAAGGATCTGATTTCTGTGTCTGGGGTTGTTCCAGCAGAGGTTGTGGAGGCACTTCTTAAATCATGCAAAAGTGGTAATTTTGATTTAGCCAACAAGGAAGTCAATAATTTCATCGCAGAGGGATATCCAGCCTCTCAGATGCTAACTCAGTTATTTGAGGCCATTATTGAAGACGACATATCAGATGAACAGAAGGCAAGAATATTCAAGAAGCTGGGTGAAGCAGATAAGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGATGTGGTCAGCAATACCATGCAAGCTTTTTGTAACATGCCAGAAGGATTTGCATACGAAGGTTAAATATTATATAGTCGGCATGTTAAATCCGGAGGGTCAATTATTCTGCTGCAAAGAAAAAGAAACTCATGAAATTCTGTATAATGAAATCGGACTTGGGCTCCGTTGTTAA 1128 0.4282 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTHQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLYLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPAEVVEALLKSCKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIIEDDISDEQKARIFKKLGEADKLMVLMNTCSFLMWSAIPCKLFVTCQKDLHTKVKYYIVGMLNPEGQLFCCKEKETHEILYNEIGLGLRC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2194g00014 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Gabi2194g00014 375 Gene3D - 176 239 - -
Gabi2194g00014 375 CDD HLD_clamp_RFC 174 233 - -
Gabi2194g00014 375 FunFam Replication factor C subunit 4 176 239 - -
Gabi2194g00014 375 Gene3D - 240 315 - -
Gabi2194g00014 375 CDD AAA 26 166 - -
Gabi2194g00014 375 SUPERFAMILY post-AAA+ oligomerization domain-like 240 309 IPR008921 GO:0003677|GO:0006260
Gabi2194g00014 375 Gene3D - 3 173 IPR027417 -
Gabi2194g00014 375 SMART AAA_5 41 174 IPR003593 GO:0016887
Gabi2194g00014 375 FunFam Replication factor C subunit 5 3 174 - -
Gabi2194g00014 375 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Gabi2194g00014 375 Pfam Replication factor C C-terminal domain 241 307 IPR013748 -
Gabi2194g00014 375 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2194g00014 Gabi-Chr2194 153507 158229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2194g00014 1 310 Core DNA Replication Machinery Family AT1G21690 80.128 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2194g00014 K10755 - tcc:18592388 568.54