Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2194g00012 ATGGCAAGCCTTGTGCAGCAGCAACAGCAAGTAAGTGTTGAAGGTAGCAACCGCATAGTAGCAGTGAACGTGACACCATCTAGCAACCTTCACACACCGTCTGATTACGATGGCTCCTCAAACAACGAGAAAAGTGGATGGAGAAAGTTTCTGACATATGTAGGTCCTGGTTTCCTCGTCTCCTTGGCTTATCTTGATCCTGGAAACTTGGAAACTGATTTGCAAGCTGGAGCTTATCACAGATATGAGCTGCTGTGGGTGGTACTAATTGGATTGATTTTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTTACCACTGGCAAACACCTTTCAGAAATATGTAAAGCTGAGTACCCATTATTTGTCAAGTATTGCTTATGGATATTAGCCGAGATTTCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCCCTGAACATACTCTTCCATATCCCAGTATGGGTAGGAGTTCTTATAACTGGCTTCAGCACTCTCGTGCTTCTTGGTGTGCAGAGATTTGGGATAAGAAAACTGGAACTGCTGATAACAATCCTAGTTTTTATAATGGCTGCATGTTTCTTTGGGGAAATTAGCTACGTAAAACCACCGGCTTCTGGTGTATTAAAGGGAATGTTTGTGCCCAAACTCGGTGGTGGAGCCACAGCCGATGCCGTTGCCCTTTTGGGTGCCCTTATCATGCCGCACAACCTTTTCCTCCACTCTGCTCTTGTGTTGTCTAGAAAAATACCCAATTCCGTGCGTGGCATCAATGATGCATGTAAGTTCTATCTCATAGAGAGTGGGTTCGCGCTGTTTGTGGCATTCCTAATCAATGTTGCAGTAGTTTCTGTGTCGGGCACTGTTTGCTCTGCCAGCAACCTTTCAGCAGAAAATAGTGATCAGTGCAACGATCTTACCCTTAACAATGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGGTCGAGCTCAACCGTTTATGCCATAGCACTATTAGCCTCAGGACAAAGTTCTGCTATCACTGGAACCTATGCAGGACAGTACATCATGCAGGGTTTCTTGGACTTAAAGATGAAAATGTGGAAAAGAAACCTGATGACTAGGCTCATTGCCATAACACCTAGTCTTATTGTCGCCATAGTTGGTGGTTCTTCTGGGGCTGGTCGCTGTATTATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTCTGATTATCATTATCATCTCATGGATACTAGGCTTTGGAATCATTGGTATTAATGTGTACTACCTCAGTACTGCCTTCGTGAGTTGGCTCATTCATAGTAGTCTCCCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTTCCTCTAATGGCAGTCTATGTCATCGCAGTTATCTACCTAACCTTCAGAAAAGACACTGTTCAGATATTTATCGAGACAAAGAATGACCCTGAAATGCAAACCCACGTGGAAAAGGGACTTTTGAATGATGGTCAATTACAGTTGACTCATATTCCTTACAGAGAAGATTTAGCTGATATCCAACAACCAGAATGGGGAACCTAG 1641 0.4363 MASLVQQQQQVSVEGSNRIVAVNVTPSSNLHTPSDYDGSSNNEKSGWRKFLTYVGPGFLVSLAYLDPGNLETDLQAGAYHRYELLWVVLIGLIFALIIQSLAANLGVTTGKHLSEICKAEYPLFVKYCLWILAEISVIAADIPEVIGTAFALNILFHIPVWVGVLITGFSTLVLLGVQRFGIRKLELLITILVFIMAACFFGEISYVKPPASGVLKGMFVPKLGGGATADAVALLGALIMPHNLFLHSALVLSRKIPNSVRGINDACKFYLIESGFALFVAFLINVAVVSVSGTVCSASNLSAENSDQCNDLTLNNASFLLKNVLGRSSSTVYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKMWKRNLMTRLIAITPSLIVAIVGGSSGAGRCIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSLIIIIISWILGFGIIGINVYYLSTAFVSWLIHSSLPKVANVFIGIIVFPLMAVYVIAVIYLTFRKDTVQIFIETKNDPEMQTHVEKGLLNDGQLQLTHIPYREDLADIQQPEWGT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2194g00012 546 Hamap Divalent metal cation transporter MntH [mntH]. 33 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 NCBIfam Nramp family divalent metal transporter 55 420 - -
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 401 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 231 254 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 Pfam Natural resistance-associated macrophage protein 71 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00012 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 42 503 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2194g00012 Gabi-Chr2194 114454 119213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2194g00012 12 543 Inorganic Solute Cotransporters AT1G15960 59.099 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2194g00012 K21398 - gmx:100787785 890.952