LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2194g00012	ATGGCAAGCCTTGTGCAGCAGCAACAGCAAGTAAGTGTTGAAGGTAGCAACCGCATAGTAGCAGTGAACGTGACACCATCTAGCAACCTTCACACACCGTCTGATTACGATGGCTCCTCAAACAACGAGAAAAGTGGATGGAGAAAGTTTCTGACATATGTAGGTCCTGGTTTCCTCGTCTCCTTGGCTTATCTTGATCCTGGAAACTTGGAAACTGATTTGCAAGCTGGAGCTTATCACAGATATGAGCTGCTGTGGGTGGTACTAATTGGATTGATTTTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTTACCACTGGCAAACACCTTTCAGAAATATGTAAAGCTGAGTACCCATTATTTGTCAAGTATTGCTTATGGATATTAGCCGAGATTTCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCCCTGAACATACTCTTCCATATCCCAGTATGGGTAGGAGTTCTTATAACTGGCTTCAGCACTCTCGTGCTTCTTGGTGTGCAGAGATTTGGGATAAGAAAACTGGAACTGCTGATAACAATCCTAGTTTTTATAATGGCTGCATGTTTCTTTGGGGAAATTAGCTACGTAAAACCACCGGCTTCTGGTGTATTAAAGGGAATGTTTGTGCCCAAACTCGGTGGTGGAGCCACAGCCGATGCCGTTGCCCTTTTGGGTGCCCTTATCATGCCGCACAACCTTTTCCTCCACTCTGCTCTTGTGTTGTCTAGAAAAATACCCAATTCCGTGCGTGGCATCAATGATGCATGTAAGTTCTATCTCATAGAGAGTGGGTTCGCGCTGTTTGTGGCATTCCTAATCAATGTTGCAGTAGTTTCTGTGTCGGGCACTGTTTGCTCTGCCAGCAACCTTTCAGCAGAAAATAGTGATCAGTGCAACGATCTTACCCTTAACAATGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGGTCGAGCTCAACCGTTTATGCCATAGCACTATTAGCCTCAGGACAAAGTTCTGCTATCACTGGAACCTATGCAGGACAGTACATCATGCAGGGTTTCTTGGACTTAAAGATGAAAATGTGGAAAAGAAACCTGATGACTAGGCTCATTGCCATAACACCTAGTCTTATTGTCGCCATAGTTGGTGGTTCTTCTGGGGCTGGTCGCTGTATTATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTCTGATTATCATTATCATCTCATGGATACTAGGCTTTGGAATCATTGGTATTAATGTGTACTACCTCAGTACTGCCTTCGTGAGTTGGCTCATTCATAGTAGTCTCCCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTTCCTCTAATGGCAGTCTATGTCATCGCAGTTATCTACCTAACCTTCAGAAAAGACACTGTTCAGATATTTATCGAGACAAAGAATGACCCTGAAATGCAAACCCACGTGGAAAAGGGACTTTTGAATGATGGTCAATTACAGTTGACTCATATTCCTTACAGAGAAGATTTAGCTGATATCCAACAACCAGAATGGGGAACCTAG	1641	0.4363	MASLVQQQQQVSVEGSNRIVAVNVTPSSNLHTPSDYDGSSNNEKSGWRKFLTYVGPGFLVSLAYLDPGNLETDLQAGAYHRYELLWVVLIGLIFALIIQSLAANLGVTTGKHLSEICKAEYPLFVKYCLWILAEISVIAADIPEVIGTAFALNILFHIPVWVGVLITGFSTLVLLGVQRFGIRKLELLITILVFIMAACFFGEISYVKPPASGVLKGMFVPKLGGGATADAVALLGALIMPHNLFLHSALVLSRKIPNSVRGINDACKFYLIESGFALFVAFLINVAVVSVSGTVCSASNLSAENSDQCNDLTLNNASFLLKNVLGRSSSTVYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKMWKRNLMTRLIAITPSLIVAIVGGSSGAGRCIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSLIIIIISWILGFGIIGINVYYLSTAFVSWLIHSSLPKVANVFIGIIVFPLMAVYVIAVIYLTFRKDTVQIFIETKNDPEMQTHVEKGLLNDGQLQLTHIPYREDLADIQQPEWGT	546

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2194g00012	546	Hamap	Divalent metal cation transporter MntH [mntH].	33	457	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	NCBIfam	metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	48	423	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	NCBIfam	Nramp family divalent metal transporter	55	420	-	-
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	129	155	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	401	420	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	231	254	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	369	386	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	341	360	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	157	176	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Gabi2194g00012	546	PRINTS	Natural resistance-associated macrophage protein signature	182	203	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2194g00012	Gabi-Chr2194	114454	119213	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2194g00012	12	543	Inorganic Solute Cotransporters	AT1G15960	59.099	0.0	623

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2194g00012	K21398		-	gmx:100787785	890.952

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