Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2194g00011 ATGCCTAATTTGCTTACACTCAAGACAGCGACGTGCTGGTTTGCCATGATGTTGTATATAACACTTGATGCAATGACACAGAAAAGTGAGTGGAGAAAGTTTCTGACATATGTAGGTCCTGGTTTCCTCGTCTCCTTGGCTTACCTTGATCCTGGAAACTTGGAAACTGATTTGCAAGCTGGAGCTAATCACAGATATAAGCTGCTGTGGGTGATACTTATTGGACTGGTGTTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTTACCACTGGGAAACACCTTGCAGAAATATGTAAAGCTGAGTACCCATTATTTGTTAGGTACTGCTTGTGGGTATTAGCCGAGATTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCGCTGAACATACTCTTCAACATTCCATTATGGGCAGGAGTTCTAACGACTGGCTGCAGCACTCTCTTGCTCCTGAGTCTGCAGAGATTTGGGGTAAGAAAGCTGGAACTGTTGATATCAACGCTAGTATTTGTAATGGCTGCATGTTTCTTTGGAGAAATGAGCTACGTAAAACCACCTGCTTCTGATGTATTGAAGGGAATGTTTGTGCCAAAACTCAGTGGTCAAGGAGCCACAGGCGACGCCATTGCTGTTTTGGGTGCCCTTGTCATGCCGCACAACCTTTTCCTCCACTCTGCTCTTGTGCTGTCTAGAAAAATACCCAATTCCGTGCGCGGAATCAATGATGCATGTAGATACTTTCTCATAGAGAGTGGTTTCGCGCTGTTTGTGGCATTTTTAATCAACGTTGCAGTAGTTTCTGTGTCGGGCACTGTTTGCTCTGCCAGCAACCTTTCTGCAGAAAATACTGATCACTGCAAAGATCTTACACTTAACTCCGCTTCTTTCTTTCTCGAGAATATGTTGGGGCGATCAAGCTCAACCATTTATGCCATAGCACTGCTAGCATCAGGACAGAGTTCTGCTATTAGTGGAACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGGACTTAAAGTTGAAGAGATGGATAAGGAACTTGATAACTAGAAGCCTTGCCATAACACCTAGTCTTATTGTCTCCATCATTGGTGGTCCTTCAGGGGCTGGTCGGCTTATTATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAATTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATGATAATCACTATCATCTCATGGATACTAGGCTCGGGAATCATTGGTATCAATGTGTACTACCTCAGTACTGCCTTCGTGGATTGGCTAATTCACAGCAGTCTACCAAAGGTGGCAAATGTGTTCGTTGGGATTATAGTGTTTCCTCTTATGGCAATCTATATCATCTCAGTTATCTATCTAACCATCAGAAAAGACACTGTTAAGACGTTTGTCGAGACGAAGAATGACCCTGAAATGCAAACCCACTTGGAAAAGGGATTTTTGAATAACGGTCAATTAGAGTTGACTCATACTCCTTATAGAGAAGATTTAGCTGATATACCACTACCAGAATAG 1587 0.4329 MPNLLTLKTATCWFAMMLYITLDAMTQKSEWRKFLTYVGPGFLVSLAYLDPGNLETDLQAGANHRYKLLWVILIGLVFALIIQSLAANLGVTTGKHLAEICKAEYPLFVRYCLWVLAEIAVIAADIPEVIGTAFALNILFNIPLWAGVLTTGCSTLLLLSLQRFGVRKLELLISTLVFVMAACFFGEMSYVKPPASDVLKGMFVPKLSGQGATGDAIAVLGALVMPHNLFLHSALVLSRKIPNSVRGINDACRYFLIESGFALFVAFLINVAVVSVSGTVCSASNLSAENTDHCKDLTLNSASFFLENMLGRSSSTIYAIALLASGQSSAISGTYAGQYIMQGFLDLKLKRWIRNLITRSLAITPSLIVSIIGGPSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIITIISWILGSGIIGINVYYLSTAFVDWLIHSSLPKVANVFVGIIVFPLMAIYIISVIYLTIRKDTVKTFVETKNDPEMQTHLEKGFLNNGQLELTHTPYREDLADIPLPE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 216 239 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 326 345 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 141 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 354 371 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 113 139 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 386 405 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PRINTS Natural resistance-associated macrophage protein signature 166 187 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 Pfam Natural resistance-associated macrophage protein 55 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 Hamap Divalent metal cation transporter MntH [mntH]. 20 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 32 408 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 485 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi2194g00011 528 NCBIfam Nramp family divalent metal transporter 39 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2194g00011 Gabi-Chr2194 81507 86207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2194g00011 27 528 Inorganic Solute Cotransporters AT1G15960 61.753 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2194g00011 K21398 - gmx:100787785 866.3