Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2190g00008 ATGGATTCAAAAGGGAGCCGAGGTACTAATTCCTGGGCAAGGCCGTCTTCCTTAACCTCTCCCGGGAATGGATTACAGACAAATTTATCCTCAGATCCTCTCTCTTTCCCAGATTATGGGGTCACAGATGCACCTTTCAAAGAATTTAACCAACCGTCTCAAACCCAGTCTATGCTTCCTTGCGACTCCAACAATGAGATAAAGATCCCTGATCAAGTAAACCATCTACTGAGTGAATCATCACAAACCAGTAGACTCCAAGATTGGGATCCCACTGTGATGTTGAATAACCTTTCCTTCCTAGAAGAAAAGATTCATCAACTCCGGGATTTAGTGCATTTGATTGTTCGTCAAAAAGCCCTTCATTTTGGACAACCTAATGAACTTGTAACTCAGGAGCAGCAGCTCATTACAACTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGAATACCCTTATAAGCACTAGTCCATTGGTTGGACAACTTGGCCAGCTTCGCGGAATTACTGTTCCTTCTGGTTCAGGTCCAAGTAGTAGCTGTATTCAACCACAAATTAATAGTGGAAATAAATTGTCTGATCAGTCCATCCAGAATGATCTACCTAATAGTTGTGAAATGGAGCAAAACTACAATATGGAAGAACATGGATTTAAAGATGAAGAAGATGCAGATGATGGAGAAAACCTTCCACCTGGTTCATATGAGATTCTACAATTAGAAAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGAATGCACATGCGAGGTCATGGTGATGAGTACAAAACTCCAGCAGCACTTTCAAAACCACATAAAGATTCTGGGTCTCAACCAAAGCTTATCAAGAGGTATTCGTGCCCCTATCCTGGTTGCAAGCGCAACAAGGATCACAAAAAGTTTCAACCTCTGAAGACTATTTTATGTGTGAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACACTTGTAGCAGATGCAACACCAAAAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTCTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTTCAAGGCCATACACCAGCCATTCCTGTGGAGGACACCAGAGGAGTAACTGGGCCACTTGATCATGACAGCAAAGAAAACTGCGTAGGAACTATGAACTTCAGTGTTGGATCAAATCCTTCAAGTGGAAATGGAGTTCAAAATGTCATGGATGTAAAAGGCAATATTGATGATCCTATGAATTATTTCTCATCATTGAACTTTGAAGCTAACTTTGGTGGATTTACTGAATTCGCTCGACCTGCATTTGAAGAATCAGACGTTTCTTTCTCTTATCTCATGACTGGATCTCTTAAACCTGGTGGAGAATCAAGTTCTGACAATCTTTGTTGA 1521 0.4043 MDSKGSRGTNSWARPSSLTSPGNGLQTNLSSDPLSFPDYGVTDAPFKEFNQPSQTQSMLPCDSNNEIKIPDQVNHLLSESSQTSRLQDWDPTVMLNNLSFLEEKIHQLRDLVHLIVRQKALHFGQPNELVTQEQQLITTDLTSIIVQLISTAGSLLPSVRNTLISTSPLVGQLGQLRGITVPSGSGPSSSCIQPQINSGNKLSDQSIQNDLPNSCEMEQNYNMEEHGFKDEEDADDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALSKPHKDSGSQPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPVEDTRGVTGPLDHDSKENCVGTMNFSVGSNPSSGNGVQNVMDVKGNIDDPMNYFSSLNFEANFGGFTEFARPAFEESDVSFSYLMTGSLKPGGESSSDNLC 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2190g00008 506 SMART c2h2final6 261 283 IPR013087 -
Gabi2190g00008 506 SMART c2h2final6 310 343 IPR013087 -
Gabi2190g00008 506 SMART c2h2final6 348 370 IPR013087 -
Gabi2190g00008 506 ProSitePatterns Zinc finger C2H2 type domain signature. 263 283 IPR013087 -
Gabi2190g00008 506 Gene3D Classic Zinc Finger 245 314 - -
Gabi2190g00008 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 288 IPR013087 -
Gabi2190g00008 506 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 73 481 IPR044300 GO:0010044|GO:0010447
Gabi2190g00008 506 SUPERFAMILY beta-beta-alpha zinc fingers 259 286 IPR036236 -
Gabi2190g00008 506 MobiDBLite consensus disorder prediction 1 57 - -
Gabi2190g00008 506 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2190g00008 Gabi-Chr2190 191239 193905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2190g00008 229 503 C2H2 Transcription Factor Family AT1G34370 67.483 9.11e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2190g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2190g00008 - - gmx:100500526 793.882