Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2190g00007 ATGGATTCAAAAGGGAGCCGAGGTACTAATTCCTGGGCAAGGCCGTCTTCCTTAACCTCTCCCGGGAATGGATTACAGACAAATTTATCCTCAGATCCTCTCTCTTTCCCAGGTTTTGGTTTGCAGCATAACCATAACAAGTGGGATGATCCTTCTATTTCAGATTATGGGGTCACAGATGCACCTTTCAAAGAATTTAACCAACCGTCTCAAACCCAGTCTATGCTTCCTTGCGACTCCAACAATGAGATAAAGATCCCTGATCAAGTAAACCATCTACTGAGTGAATCATCACAAACCAGTAGACTCCAAGATTGGGATCCCACTGTGATGTTGAATAACCTTTCCTTCCTAGAAGAAAAGATTCATCAACTCCGGGATTTAGTGCATTTGATTGTTCGTCAAAAAGCCCTTCATTTTGGACAACCTAATGAACTTGTAACTCAGGAGCAGCAGCTCATTACAACTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGAATACCCTTATAAGCACTAGTCCATTGGTTGGACAACTTGGCCAGCTTCGCGGAATTACTGTTCCTTCTGGTTCAGGTCCAAGTAGTAGCTGTATTCAACCACAAATTAATAGTGGAAATAAATTGTCTGATCAGTCCATCCAGAATGATCTACCTAATAGTTGTGAAATGGAGCAAAACTACAATATGGAAGAACATGGATTTAAAGATGAAGAAGATGCAGATGATGGAGAAAACCTTCCACCTGGTTCATATGAGATTCTACAATTAGAAAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGAATGCACATGCGAGGTCATGGTGATGAGTACAAAACTCCAGCAGCACTTTCAAAACCACATAAAGATTCTGGGTCTCAACCAAAGCTTATCAAGAGGTATTCGTGCCCCTATCCTGGTTGCAAGCGCAACAAGGATCACAAAAAGTTTCAACCTCTGAAGACTATTTTATGTGTGAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACACTTGTAGCAGATGCAACACCAAAAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTCTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTTCAAGGCCATACACCAGCCATTCCTGTGGAGGACACCAGAGGAGTAACTGGGCCACTTGATCATGACAGCAAAGAAAACTGCGTAGGAACTATGAACTTCAGTGTTGGATCAAATCCTTCAAGTGGAAATGGAGTTCAAAATGTCATGGATGTAAAAGGCAATATTGATGATCCTATGAATTATTTCTCATCATTGAACTTTGAAGCTAACTTTGGTGGATTTACTGAATTCGCTCGACCTGCATTTGAAGAATCAGACGTTTCTTTCTCTTATCTCATGACTGGATCTCTTAAACCTGGTGGAGAATCAAGTTCTGACAATCTTTGTTGA 1572 0.4039 MDSKGSRGTNSWARPSSLTSPGNGLQTNLSSDPLSFPGFGLQHNHNKWDDPSISDYGVTDAPFKEFNQPSQTQSMLPCDSNNEIKIPDQVNHLLSESSQTSRLQDWDPTVMLNNLSFLEEKIHQLRDLVHLIVRQKALHFGQPNELVTQEQQLITTDLTSIIVQLISTAGSLLPSVRNTLISTSPLVGQLGQLRGITVPSGSGPSSSCIQPQINSGNKLSDQSIQNDLPNSCEMEQNYNMEEHGFKDEEDADDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALSKPHKDSGSQPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPVEDTRGVTGPLDHDSKENCVGTMNFSVGSNPSSGNGVQNVMDVKGNIDDPMNYFSSLNFEANFGGFTEFARPAFEESDVSFSYLMTGSLKPGGESSSDNLC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2190g00007 523 SUPERFAMILY beta-beta-alpha zinc fingers 276 303 IPR036236 -
Gabi2190g00007 523 Gene3D Classic Zinc Finger 262 331 - -
Gabi2190g00007 523 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Gabi2190g00007 523 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 89 498 IPR044300 GO:0010044|GO:0010447
Gabi2190g00007 523 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2190g00007 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
Gabi2190g00007 523 SMART c2h2final6 327 360 IPR013087 -
Gabi2190g00007 523 SMART c2h2final6 365 387 IPR013087 -
Gabi2190g00007 523 SMART c2h2final6 278 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2190g00007 Gabi-Chr2190 191239 194176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2190g00007 246 520 C2H2 Transcription Factor Family AT1G34370 67.483 1.74e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2190g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2190g00007 - - gmx:100500526 831.632