Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi218g00002 ATGGAAAGAATGTTCCCTACTAAGAAGCCTTCAACTATGAATTCTCATGACAGAACCATGTGTGTCCAAGGTGACTCAGGGCTTGTCCTCACCACAGACCCAAAACCACGCCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGGCCTGATAAGGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGAAAGCAGCCCCACAAGGAATTCAGTGAGCACAGTTCGATTAAGGATGGTATGAGAGAACTGCAAAGAAATACTAGCTCCTCGTCTTCAATGATTGGCCGCAACATGAACGAGATGCAAATGGAGGTGCAAAGAAGATTACATGAACAACTAGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCACGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCACACAATTGCAGGTGAAAACATGGCATCTTCTGCTTCCAACTCAAAGGTTATTGGAGCTCAAGGCATTCCTGAAATGGGGGTCATGAAAGAATTTGGTTCCCCTCTTAATTTCCCTTCTTTTCAAGATCTTAACATTTATGGTAGTGGTGACCAACTTGATCTTCAGCAGAACATGGAGAGGCCAACCCTTGATGGGTTTGTGCCATCTAATGAAAATCTTTTTCTTGGGAAGAAGAGGCCAAGCCTTTATAGTGGGAGTGGAAAGAGCCCTTTGATTTGGAATGATGATTTCAGGCTTCAAGATTTGGCAATGGCTAATTCGTCATGCATTAGTCCTCAAGATGATGATCCTTACAAAGGTGACCAGATTCAGATTGCACCATCAGCAATGGATAGAGGTGCTGAGAGTGATTCTATGTCTGAGATCTATGACACAAAGAAAGCACTCCAGGGAGAAACTCTTGGTGAGAAGAAATTTGATGTATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAACGCCTCTTCAATCAGAAAGGATGTGTCCTATGATCAATACTGGTAGAAGCTCACAATTTGGTTGA 1080 0.4333 MERMFPTKKPSTMNSHDRTMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSSIKDGMRELQRNTSSSSSMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAHGKYMQSILEKAYHTIAGENMASSASNSKVIGAQGIPEMGVMKEFGSPLNFPSFQDLNIYGSGDQLDLQQNMERPTLDGFVPSNENLFLGKKRPSLYSGSGKSPLIWNDDFRLQDLAMANSSCISPQDDDPYKGDQIQIAPSAMDRGAESDSMSEIYDTKKALQGETLGEKKFDVSMKLERPSPRRTPLQSERMCPMINTGRSSQFG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi218g00002 359 MobiDBLite consensus disorder prediction 345 359 - -
Gabi218g00002 359 FunFam Myb family transcription factor 34 92 - -
Gabi218g00002 359 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Gabi218g00002 359 Gene3D - 34 92 - -
Gabi218g00002 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Gabi218g00002 359 MobiDBLite consensus disorder prediction 331 359 - -
Gabi218g00002 359 Pfam MYB-CC type transfactor, LHEQLE motif 128 166 IPR025756 -
Gabi218g00002 359 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Gabi218g00002 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 185 IPR044848 GO:0003700
Gabi218g00002 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi218g00002 Gabi-Chr218 70338 72512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi218g00002 4 359 G2-like Transcription Factor Family AT1G79430 54.522 9.51e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi218g00002 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi218g00002 - - gmx:100807793 538.495