Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi218g00001 ATGGAAAGAATGTTCCCTACTAAGAAGCCTTCAACTATGAATTCTCATGACAGAACCATGTGTGTCCAAGGTGACTCAGGGCTTGTCCTCACCACAGACCCAAAACCACGCCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGGCCTGATAAGGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGAAAGCAGCCCCACAAGGAATTCAGTGAGCACAGTTCGATTAAGGATGAACTGCAAAGAAATACTAGCTCCTCGTCTTCAATGATTGGCCGCAACATGAACGAGATGCAAATGGAGGTGCAAAGAAGATTACATGAACAACTAGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCACGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCACACAATTGCAGGTGAAAACATGGCATCTTCTGCTTCCAACTCAAAGGTTATTGGAGCTCAAGGCATTCCTGAAATGGGGGTCATGAAAGAATTTGGTTCCCCTCTTAATTTCCCTTCTTTTCAAGATCTTAACATTTATGGTAGTGGTGACCAACTTGATCTTCAGCAGAACATGGAGAGGCCAACCCTTGATGGGTTTGTGCCATCTAATGAAAATCTTTTTCTTGGGAAGAAGAGGCCAAGCCTTTATAGTGGGAGTGGAAAGAGCCCTTTGATTTGGAATGATGATTTCAGGCTTCAAGATTTGGCAATGGCTAATTCGTCATGCATTAGTCCTCAAGATGATGATCCTTACAAAGGTGACCAGATTCAGATTGCACCATCAGCAATGGATAGAGGTGCTGAGAGTGATTCTATGTCTGAGATCTATGACACAAAGAAAGCACTCCAGGGAGAAACTCTTGGTGAGAAGAAATTTGATGTATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAACGCCTCTTCAATCAGAAAGGATGTGTCCTATGATCAATACTGGTAGAAGCTCACAATTTGGTTGA 1071 0.4332 MERMFPTKKPSTMNSHDRTMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSSIKDELQRNTSSSSSMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAHGKYMQSILEKAYHTIAGENMASSASNSKVIGAQGIPEMGVMKEFGSPLNFPSFQDLNIYGSGDQLDLQQNMERPTLDGFVPSNENLFLGKKRPSLYSGSGKSPLIWNDDFRLQDLAMANSSCISPQDDDPYKGDQIQIAPSAMDRGAESDSMSEIYDTKKALQGETLGEKKFDVSMKLERPSPRRTPLQSERMCPMINTGRSSQFG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi218g00001 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Gabi218g00001 356 FunFam Myb family transcription factor 34 92 - -
Gabi218g00001 356 MobiDBLite consensus disorder prediction 317 356 - -
Gabi218g00001 356 MobiDBLite consensus disorder prediction 92 116 - -
Gabi218g00001 356 MobiDBLite consensus disorder prediction 317 336 - -
Gabi218g00001 356 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Gabi218g00001 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 182 IPR044848 GO:0003700
Gabi218g00001 356 Pfam MYB-CC type transfactor, LHEQLE motif 125 163 IPR025756 -
Gabi218g00001 356 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Gabi218g00001 356 MobiDBLite consensus disorder prediction 342 356 - -
Gabi218g00001 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Gabi218g00001 356 Gene3D - 34 92 - -
Gabi218g00001 356 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi218g00001 Gabi-Chr218 70338 72512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi218g00001 4 356 G2-like Transcription Factor Family AT1G79430 53.886 1.14e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi218g00001 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi218g00001 - - gmx:100807793 531.176