Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2187g00007 ATGGAGCAATTTACAAGAGACCCTCGTGGCTCGCTCGAAGTGTTCAACCCTTCTTCCTCCAACTCCACCACCGAGAAAACAGTCAACTCGCCGTTGCGTTCCAATTCCTCGTGGAAGACATGGATGGAACCAATCGCCGGCGACTCCATTCCTTCCGATGAAATCACCAACACCTCCTGGATGGCCCTCAAGGATCCCATTCCAAGGTCGCCGCCGAAACTCGCAGCCGTCCTCGGCGATCCTGTGCCGGCGGAGGGAGAATCCGACGCGGCGGCTCAGAGAGCTGCGGAGTGGGGTTTGGTGCTGAAAAAGGATACGGAGACCGGAAAGACGCAGGGAGTGGTGGTTCGGAACTCCGGCGGTTCTGAGCCGAGCGCGAAGGTCGCCGGCTGTTCGAGGAGGGACTCGAACAACTCCGTGAGGAGCTCCGGCGAATTCTCCGACGAAGGCGGCATGGAATCCCGGGGAATACCTAGGGTTTCGGAGGACTTGAGGGACGCTTTATCGGCGTTTCAACAAACTTTCGTCGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCCAGTGCCGGGTTCTTTAAGATGACGGGTTATACATCCAAGGAGGTCATAGGGAGGAACTGTCGGTTTTTACAGGGAGCGGATACGGGTCCTGATGACGTGGCAAAGATAAGGGAAGCGCTGCAAACAGGGATTACTTACTGTGGAAGGTTACTGAATTACAAGAAGGATGGGACACCCTTTTGGAACCTTCTCACTATTGCACCCATTAAGGACGACGATGGCAAAGTACTCAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAAAAGATGATACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCAAACACTTCAGTATCTGAGTTGGTACAAGCCGTGAGGCGTCCACGGGCATTGAGTGAATCAGCAAACCGTCCCTTGATCAAAAAATCAGCATGTGATGATGATGATGATTCTGAAGACAAAGCAAAAAATTCATCAAGGAGAAAATCTGAGAGTGTTGCTTCATTTAGACGTAAATCACATGCAGGTGACAGAAATTCAATGCAGCCAATCATTGAGCTTTCTGAAAAGAAACACAAAAATTCTCGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAATTCAGTCCAGTAACGAAGGCTGCAATGATGAACAAGCTGTTGAGGATAGCTCTGAGACTAGTGATGATGATGAGAGGCCTGATAGTTTTGATAAAAAGATACTGAAGAGGGAAAAAAGAAAGGGTCTTGATCTTGCTACCACTCTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCAAGGCTACCTGACAACCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACAGTGCGAAAAATTAGAGAGGCTATTGACAACCAAACAGAAGTTACTGTGCAGCTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTACAATATTTTATTGGAGTTCAACTGGATGGTAGTCAACATGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCAAAGGAGGGAGAAAAATTGGTAAAAGAGACTGCAGAAAATATTGATGATGCAGTGAGAGAACTTCCAGATGCCAATTCGAAACCTGAAGATCTATGGATAAATCATTCAAAACTGGTTCAGCCCAAACCTCATAGGAGAGAGGACGCTGCTTGGAAAGCCATTCAGAAGATCCTAGACAGTGGAGAACAGATAGGTTTGAAGCATTTTAAGCCAATTAAACCTTTGGGATCAGGAGATACTGGCAGCGTTCATCTGGTGGAGCTATGTGGAACTGGTCAACATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGACATATTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTGTCCTGGTGGAGAACTATTCCTGCTTCTTGAACAACAGCCATCAAAGGTCCTTAAGGAAGATGCAGTGAGATTTTATGCGGCTGATGTAGTTGTTGCATTGGAGTACCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTCCAGAACAATGGACATGTGTCTCTAACAGATTTTGATTTGTCATGCTTAACATCTTGCAAACCACAGCTTCTAGTTCCAGTTACAAATGAAAAGAAGAAACAACAGAAAGGAAACCAGGCTCCAATATTTATGGCTGAACCTATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCCGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGAATAGGCAAAGAACATTTTCAAATATTCTCCACAAGGATCTGAAATTTCCCAAAAGTAAACAGGTAAGTCTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGGACAGAGACCCCAAAAGCAGATTGGGTTCACAGGGAGGAGCAAATGACATTAAGCATCACCCCTTCTTCCGGGGTGTCAACTGGGCCCTAGTTCGTTGCATGAAACCTCCAGAGCTTGATGTTCCTCTCTCCAACACAACTGAAGAAGATAAGGAAGCCAAATTCGTAGATCCTGGCCTAGAGGAGATAAATGTCTTCTGA 2919 0.4536 MEQFTRDPRGSLEVFNPSSSNSTTEKTVNSPLRSNSSWKTWMEPIAGDSIPSDEITNTSWMALKDPIPRSPPKLAAVLGDPVPAEGESDAAAQRAAEWGLVLKKDTETGKTQGVVVRNSGGSEPSAKVAGCSRRDSNNSVRSSGEFSDEGGMESRGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTGPDDVAKIREALQTGITYCGRLLNYKKDGTPFWNLLTIAPIKDDDGKVLKFIGMQVEVSKHTEGSKEKMIRPNGLPESLIRYDARQKEKANTSVSELVQAVRRPRALSESANRPLIKKSACDDDDDSEDKAKNSSRRKSESVASFRRKSHAGDRNSMQPIIELSEKKHKNSRRRSFMGFIRKIQSSNEGCNDEQAVEDSSETSDDDERPDSFDKKILKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEKLVKETAENIDDAVRELPDANSKPEDLWINHSKLVQPKPHRREDAAWKAIQKILDSGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTGQHFAMKAMEKGVMLNRNKVHRACTEREILDILDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLEQQPSKVLKEDAVRFYAADVVVALEYLHCQGIIYRDLKPENVLLQNNGHVSLTDFDLSCLTSCKPQLLVPVTNEKKKQQKGNQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKNRQRTFSNILHKDLKFPKSKQVSLSAKQLMYRLLDRDPKSRLGSQGGANDIKHHPFFRGVNWALVRCMKPPELDVPLSNTTEEDKEAKFVDPGLEEINVF 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 12 35 - -
Gabi2187g00007 972 SMART pac_2 518 560 IPR001610 -
Gabi2187g00007 972 SMART pac_2 237 279 IPR001610 -
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 334 371 - -
Gabi2187g00007 972 SUPERFAMILY Protein kinase-like (PK-like) 628 951 IPR011009 -
Gabi2187g00007 972 Gene3D PAS domain 174 331 - -
Gabi2187g00007 972 SUPERFAMILY PYP-like sensor domain (PAS domain) 181 273 IPR035965 -
Gabi2187g00007 972 CDD PAS 456 556 IPR000014 -
Gabi2187g00007 972 Gene3D Transferase(Phosphotransferase) domain 1 726 943 - -
Gabi2187g00007 972 Pfam Protein kinase domain 644 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2187g00007 972 NCBIfam PAS domain S-box protein 466 556 IPR000014 -
Gabi2187g00007 972 NCBIfam PAS domain S-box protein 187 280 IPR000014 -
Gabi2187g00007 972 ProSiteProfiles PAS repeat profile. 441 514 IPR000014 -
Gabi2187g00007 972 CDD STKc_phototropin_like 640 950 - -
Gabi2187g00007 972 SMART pas_2 162 231 IPR000014 -
Gabi2187g00007 972 SMART pas_2 443 512 IPR000014 -
Gabi2187g00007 972 FunFam LOV domain-containing protein 641 725 - -
Gabi2187g00007 972 FunFam Putative LOV domain-containing protein 174 330 - -
Gabi2187g00007 972 ProSiteProfiles Protein kinase domain profile. 642 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2187g00007 972 ProSiteProfiles PAS repeat profile. 160 234 IPR000014 -
Gabi2187g00007 972 Gene3D PAS domain 431 594 - -
Gabi2187g00007 972 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Gabi2187g00007 972 CDD PAS 187 276 IPR000014 -
Gabi2187g00007 972 ProSiteProfiles PAC domain profile. 515 569 IPR000700 -
Gabi2187g00007 972 Pfam PAS domain 464 556 IPR000014 -
Gabi2187g00007 972 Pfam PAS domain 181 277 IPR000014 -
Gabi2187g00007 972 SMART serkin_6 642 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2187g00007 972 FunFam Putative LOV domain-containing protein 726 941 - -
Gabi2187g00007 972 FunFam LOV domain-containing protein 430 594 - -
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 323 387 - -
Gabi2187g00007 972 ProSiteProfiles PAC domain profile. 234 288 IPR000700 -
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 111 156 - -
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 131 145 - -
Gabi2187g00007 972 Gene3D Phosphorylase Kinase; domain 1 641 725 - -
Gabi2187g00007 972 Coils Coil 573 593 - -
Gabi2187g00007 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Gabi2187g00007 972 PANTHER FLIPPASE KINASE 1-RELATED 453 948 - -
Gabi2187g00007 972 SUPERFAMILY PYP-like sensor domain (PAS domain) 457 556 IPR035965 -
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 1 35 - -
Gabi2187g00007 972 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2187g00007 Gabi-Chr2187 183065 203819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2187g00007 6 972 AGC Kinase Gene Family AT3G45780 69.587 0.0 1323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi2187g00007 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2187g00007 K20715 - gmx:100804524 1607.81