Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2187g00004 ATGGATTGCTTTTGTTGCCCAAAAACTAAAGACTATAGTCACACCCAGAACCCCACCAATCTCACTGCTCCAGATAAGGCTAAAGTTGATTTCAAAGTGAATGGGAAAAAAGAAGATGATTCTAAGGGTGATCAACTTGCTCAGGACGTGAAGAATTCAAATTTGAATGAGGAGGTTTCTGAGGATAGAACAGATAATGGTAACCGGGCACAGACATTCAGTTTTAATGAACTTGCAGAAGCAACAGGAAATTTTAGGTTGGATTGCTTTTTGGGGGAAGGAGGTTTTGGCAAGGTTTACAAGGGTCACTTGGAGAGAGTAAACCAGGTTGTAGCTATAAAGCAACTCGACCCTAATGGAGTTCAAGGAATTCGGGAATTTGCTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTCAAATTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCACTGGGATCTTTGGAGAACCACCTGCTTGATCTTCCGCCTGGTAGAAAACCACTTGATTGGAATACAAGAATGAAAATAGCAGCTGGTGCAGCTAAGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTAATATACCGTGACTTGAAATGCTCTAACATTTTGTTAGGCGAGGGATATTATCCCAAGTTATCTGATTTTGGCTTGGCAAGAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGAACATATGGGTACTGCGCCCCAGATTATGCAATGACGGGTCAGTTGACATTCAAGTCTGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTCATCACTGGAAGAAAAGCTATTGACCATACAAAATCTGGCAAAGAACAAAATCTAGTTGCATGGGCAAGACCGTTATTCAGAGACAGGAGAAAATTCTCACAAATGGTTGACCCATTGCTTGAAGGTCAATATCCGGTGAGAGGTTTATACCAAGCTCTTGCTATTGCTGCAATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTTATAGTTGATGTGGTAACTGCTCTAAATTACCTTGCTTCTCAGAAGTATGATCCCCAAGTTCATCCAGTACAAAGCTCTAGAAAAAGTCCACCTTCTCCCAGAGTGAAAAGAGATGATGATCATAGACATATTTTTAGTAATGAGCATGAGACAGATAGATCTGTAAACTAG 1224 0.4167 MDCFCCPKTKDYSHTQNPTNLTAPDKAKVDFKVNGKKEDDSKGDQLAQDVKNSNLNEEVSEDRTDNGNRAQTFSFNELAEATGNFRLDCFLGEGGFGKVYKGHLERVNQVVAIKQLDPNGVQGIREFAVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLLDLPPGRKPLDWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLGEGYYPKLSDFGLARVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKSGKEQNLVAWARPLFRDRRKFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQVHPVQSSRKSPPSPRVKRDDDHRHIFSNEHETDRSVN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2187g00004 407 CDD STKc_IRAK 91 360 - -
Gabi2187g00004 407 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Gabi2187g00004 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi2187g00004 407 MobiDBLite consensus disorder prediction 11 68 - -
Gabi2187g00004 407 Gene3D Transferase(Phosphotransferase) domain 1 162 379 - -
Gabi2187g00004 407 MobiDBLite consensus disorder prediction 382 407 - -
Gabi2187g00004 407 MobiDBLite consensus disorder prediction 370 407 - -
Gabi2187g00004 407 Gene3D Phosphorylase Kinase; domain 1 55 161 - -
Gabi2187g00004 407 FunFam probable serine/threonine-protein kinase RLCKVII 57 161 - -
Gabi2187g00004 407 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2187g00004 407 PANTHER OS07G0668900 PROTEIN 23 371 - -
Gabi2187g00004 407 SUPERFAMILY Protein kinase-like (PK-like) 71 384 IPR011009 -
Gabi2187g00004 407 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Gabi2187g00004 407 Pfam Protein tyrosine and serine/threonine kinase 88 303 IPR001245 GO:0004672|GO:0006468
Gabi2187g00004 407 MobiDBLite consensus disorder prediction 29 46 - -
Gabi2187g00004 407 SMART serkin_6 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2187g00004 Gabi-Chr2187 166910 170768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2187g00004 1 364 Glycoside Hydrolase AT3G07070 56.868 6.85e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2187g00004 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2187g00004 - - gmx:100804000 724.546