Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2187g00002 ATGGATAACGTTGGTGGCAGTTCCTCTAATGAATTCAATGGTGGTGGCATCAAGGAACAAGACCGGTTGTTGCCAATAGCCAATGTTGGCCGCATCATGAAAAAGATTTTGCCTCAGAATGGAAAAATCTCGAAGGAATCGAAGGAAACAATGCAAGAATGTGTGTCAGAATTCATAAGCTTTGTAACAAGTGAAGCATCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACAGTAAACGGGGATGACATATGCTGGGCATTGGGAACACTAGGTTTTGATGATTATGCAGAGCCAATGAGAAGGTATTTGCACAGATACAGAGAATTTGAGGTAGAAAGAGGAAATAGCCCTGAAGAGAAGGATGAACTATTTAAGTTGCCTCCTAGAGGAACTAGCTAG 399 0.4236 MDNVGGSSSNEFNGGGIKEQDRLLPIANVGRIMKKILPQNGKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYREFEVERGNSPEEKDELFKLPPRGTS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2187g00002 132 MobiDBLite consensus disorder prediction 111 132 - -
Gabi2187g00002 132 SUPERFAMILY Histone-fold 20 119 IPR009072 GO:0046982
Gabi2187g00002 132 MobiDBLite consensus disorder prediction 111 126 - -
Gabi2187g00002 132 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Gabi2187g00002 132 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Gabi2187g00002 132 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Gabi2187g00002 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi2187g00002 132 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi2187g00002 132 FunFam Nuclear transcription factor Y subunit B-3 13 126 - -
Gabi2187g00002 132 Gene3D Histone, subunit A 15 126 IPR009072 GO:0046982
Gabi2187g00002 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2187g00002 Gabi-Chr2187 83911 84309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2187g00002 17 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.768 7.57e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi2187g00002 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2187g00002 K08065 - gmx:100794513 214.157