Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2181g00005 ATGGCGGAGGATATGGAAATTGATCATATTGTGGATGTACCTGATACCCCAGATAGATTAACTGTCAGGCATGATGATCGGAAATATGTAGGTAATCCTGAGAAGAGGGAGAGGGCTTTTCCTGTCGCTGATGAAATGAATAGCTGCAGCAACTATATAGCAGTGTACCCCTCAGAGAAATCTTATCCATCTCAAAATGCTCCCATTTTTAGGAGAGCCCAAACTGAGAAAAATTTTGGACCTAAGACAGAACACTCTAATGGAGCTGGAAAGATGGAAAAAGGGAAAACTATTAGCTCTAAGTTTCCTTCTAAATCATCTCACCATGGGCCTATTTCTGTTTTAGATTTGACCAAAGAGAATGGACAGTTCCAGCCTTTGAAACCATCTTTCTCACATCGTGGATCAAGAGAAAGTATTGGGAACACTTCATTACCATTCATTTCTGATTCTTCTGATACATCTAGAAATGCCTTCACTGGAAAATGTAAACTAGATAATAAAACACTTCCAGGTCGTAATATATCTATGGACCGTGGCAAGAGCATTTCTCTGTCAAATGATTCTCATGCTCAATCAAAAACTGATAGGCAAGAGTCTTTGCCTCCTCGTTTTTCCACCGCTCCAAGGAGTAGAGGGCACAAGAGATTGGTACGAAACGGGTGCATTTCACCACACAATATTGCATCAAGGGCAAAACAGTCAGCTGAGCAGAGCAGCCATCAAACCAATGATGTTGAGCACAGTCTTTCTGGGCATTCAGTTTCTAGCATTACAATGTCACCAATTACTGTTGATGATATAGTTGCTGAAGGGAGAGGCAGTGGTAGAGTGAAAGGAAAGGAAGTACTTATTCATCCATCATCACAGGAACTGAATGCTGGAACTATTCACACTGTTAACAGCAGCCCTGTGATCAATTATGAAGATGCCAATGCTACCAGTAATGCTATAAGAAATTCACTTAAATTCTCTGGGGGACAAGGTGGTTGGAGAACTACACATAATGAGAAGAATGCTGATCAGCACTTGTATGATGTAAATGGGCATTGTTCAAGGAGAAATTATGATGCTGGAAGATTTGTTAATAGACAGAATACGAACAGAATGGACAGAAGAGACACTGGGAGCAGTCAAATCAGAAAGGAGGTTCATGGTTCTGTATTAGATCATACAGCTCATCCAACTTCTCTGATCATTCCGGAGGTAGACCCAACAACTGGAACACGACCTACTGCTGACACACTGACTAAAAGGCAAAGGAAACGTGGATCAACTTTGGGAAATCCTAATGAAGCTTCTTATAATTCAGAAATTATGTTCCTCGGTTCATCTGGGGAATCATCAAGCTCATCCCGGAGCCCTGTCTTGGATCCTGAAATGATTGAGTTGTTATCCACACCTGAGTACACCAACAGACTTTCTGAAGATTTAGATGACAACGAAAATAATAGCTCAGATGCTCGGGCAAGACAAGTAGAAGCAGATGAGATATTGGCTCGTGAACTCCAAGAACAACTGTATCATGATGATTCTTTTGAAGGAAGAAGGATTGACGACCATTTAGCGTGGGAGATACAGCATGCAGAGGATCATCTGCATGCATCTGTTGATAGTCACCATATTTCTTATCCTACATGGATACCAAGGGCAAATAGACAGCCTCGCTCACGGTCTCGTCAAAGTCTTTCAAATAGGAGGAGAACTGTGCCTCAAGTTCATTTCTCTAATAGAATGTTACAGTTGAGGAGTCGCATTACAAGTCGGTCTCCAACACCATTCTTGTCTAGAGAAAGACGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTTGATATATTGGAAGCGTTAGAGGATGCAGTGGGGGATCTTAGTGATATGGGAGTGGCTGATGACATTTTTCATGCTCATCGCGATTTCAATGAAAACGATTATGAAATGTTATTGGCCCTTGATGAACAAAATCACCAACATACTGGTGCATCTGCCAATCAGATCAATAGCTTGCCACAGTCCACCGTCCAGACTGACAACTTCACAGAGGCATGTGCCATATGTCTTGAGAATCCAGTCAGGGGAGAAATTATTCGCCACCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAAAACGTCATGCCCAGTGTGCAAGTCATCTATCAGCTAA 2193 0.4204 MAEDMEIDHIVDVPDTPDRLTVRHDDRKYVGNPEKRERAFPVADEMNSCSNYIAVYPSEKSYPSQNAPIFRRAQTEKNFGPKTEHSNGAGKMEKGKTISSKFPSKSSHHGPISVLDLTKENGQFQPLKPSFSHRGSRESIGNTSLPFISDSSDTSRNAFTGKCKLDNKTLPGRNISMDRGKSISLSNDSHAQSKTDRQESLPPRFSTAPRSRGHKRLVRNGCISPHNIASRAKQSAEQSSHQTNDVEHSLSGHSVSSITMSPITVDDIVAEGRGSGRVKGKEVLIHPSSQELNAGTIHTVNSSPVINYEDANATSNAIRNSLKFSGGQGGWRTTHNEKNADQHLYDVNGHCSRRNYDAGRFVNRQNTNRMDRRDTGSSQIRKEVHGSVLDHTAHPTSLIIPEVDPTTGTRPTADTLTKRQRKRGSTLGNPNEASYNSEIMFLGSSGESSSSSRSPVLDPEMIELLSTPEYTNRLSEDLDDNENNSSDARARQVEADEILARELQEQLYHDDSFEGRRIDDHLAWEIQHAEDHLHASVDSHHISYPTWIPRANRQPRSRSRQSLSNRRRTVPQVHFSNRMLQLRSRITSRSPTPFLSRERRPRFPLDMDLDMRLDILEALEDAVGDLSDMGVADDIFHAHRDFNENDYEMLLALDEQNHQHTGASANQINSLPQSTVQTDNFTEACAICLENPVRGEIIRHLPCLHKFHKDCIDPWLHRKTSCPVCKSSIS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 123 162 - -
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 548 569 - -
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 227 254 - -
Gabi2181g00005 730 Pfam Ring finger domain 684 726 IPR001841 -
Gabi2181g00005 730 FunFam RING/U-box superfamily protein 650 730 - -
Gabi2181g00005 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 730 IPR013083 -
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 123 254 - -
Gabi2181g00005 730 CDD RING-H2_PA-TM-RING 685 726 - -
Gabi2181g00005 730 SUPERFAMILY RING/U-box 684 729 - -
Gabi2181g00005 730 SMART ring_2 685 725 IPR001841 -
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 79 110 - -
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 550 569 - -
Gabi2181g00005 730 MobiDBLite consensus disorder prediction 399 434 - -
Gabi2181g00005 730 ProSiteProfiles Zinc finger RING-type profile. 685 726 IPR001841 -
Gabi2181g00005 730 PANTHER SI:CH211-59O9.10 227 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2181g00005 Gabi-Chr2181 146836 162001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2181g00005 433 730 C3H Transcription Factor Family AT1G04790 45.455 1.43e-64 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2181g00005 - - aprc:113872307 1026.93