Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi217g00005 ATGATGCATCGTTGTTGCAGTAGCTCTCAGGGGCACGTGACGGGAACGTGCACATGCGGTATGTTTCATGGCCAAACCAATTCTTACCCTATGCTATTCTCCATGCCCAATCAAAATCCCTACGATGATTATGAATCCGACGTGTATTCCTTCACGCCCTCTTCTTCTTCCGTGGACTGCACGCTCTCCCTTGGAACCCCATCCACACGTTTAACTGAAGACGAAGAGAAACGAACCCGCCATGACCGTCGATCTTCCGTCACCAATTTTTGCTGGGATATATTGCAATCAAAACACAACCCACAATCTCAAAACAAATCCAACAAAGGAAGCAATGGTAACAACAACAACAACAACCACAATGATCCTCTCCTCGCTCGTCGTTGCGCTAATTGCGATACCACTTCCACACCCCTTTGGAGGAATGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCCAGCGCTGCAGCCGCCGCCGCCGCAACAACAGCCGTGGCTCACGACGGTTATAGCTACCAGAACAACAATTCGTGGTACGCACACTCGCAGGTTCATGATTCCGATAGAGACTCAGAGAATGGTGTTCCTTTTCTGTCTTGGAGACTTAACGTTGCAGACAGAACAACGAGTCTCGTTCACGACTTTACAAGATGA 690 0.487 MMHRCCSSSQGHVTGTCTCGMFHGQTNSYPMLFSMPNQNPYDDYESDVYSFTPSSSSVDCTLSLGTPSTRLTEDEEKRTRHDRRSSVTNFCWDILQSKHNPQSQNKSNKGSNGNNNNNNHNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAAAATTAVAHDGYSYQNNNSWYAHSQVHDSDRDSENGVPFLSWRLNVADRTTSLVHDFTR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi217g00005 229 PANTHER GATA TRANSCRIPTION FACTOR 18 11 229 IPR044272 GO:0003700|GO:0009908
Gabi217g00005 229 MobiDBLite consensus disorder prediction 53 69 - -
Gabi217g00005 229 SMART GATA_3 123 175 IPR000679 GO:0006355|GO:0043565
Gabi217g00005 229 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Gabi217g00005 229 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Gabi217g00005 229 Gene3D - 125 181 IPR013088 GO:0006355|GO:0008270
Gabi217g00005 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 164 - -
Gabi217g00005 229 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Gabi217g00005 229 MobiDBLite consensus disorder prediction 99 122 - -
Gabi217g00005 229 MobiDBLite consensus disorder prediction 53 82 - -
Gabi217g00005 229 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi217g00005 Gabi-Chr217 91625 92540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi217g00005 18 229 C2C2-Gata Transcription Factor Family AT3G50870 42.254 9.04e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi217g00005 GATA 5.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi217g00005 - - gmx:100790571 293.123