Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00325 ATGGAAGGCAAAGTTGCATTAAAAAAATTGCTGCAAGTTCAGGAAATGCTATATGATAATACAGATGCATTGAACAGGACTGAAGAACCCTCCATAAAAAACACTCTTCTTAGTTTGAACATGAATAACTCAGATTCTCCTCAAAATCAAGAAGAGCAGCCCGTGACCCAATTGGACTTTCTGAAAATTAAGCTAGAGGAAGTGAAGAAGGAGAATCAGAATTTAAGATCTATGCTAAATCAGATTAGTGAACACTACGGAGATCTTCAGAATCGGTTATTGTTAGCCATACAGCAGCAACTATCTTCATCACATGGAAATGATGATGACCTGCTGGCAAATGATGACATGGAGAAACCAGTGTTACCCACCAGGCAGTTCTTAAATAGTTGTAACAAAAGACCTTCAGATGGCAGCACAACAAAAGTATTTGCATATCCTGAAAACATTGAGAAGAACATAGGCAAAAACCTTAAATATGCTTACAATGTTGAAGGTAAAACCAATAAGCAAATAACAACATCACAAGAAGCAAAAATCAAAGAAGATCAAGCATGTGTGGCTTCTTGCAGGAAAGCTAGAGTGTCCATAAGGGCAAGATCAGATTTTTCTTTGATGGGTGATGGGTGTCAATGGAGAAAGTATGGACAAAAGATAGCAAAGGGTAACCCTTGTCCCAGGGCCTACTATCGTTGCAACATGGGAACAGCATGTCCAGTTCGTAAGCAGGTTCAAAGGTGTGCTGTGGATGAAACTGTTCTCATCACAACATATGAGGGGAATCATAATCATCCACTCCCACCGGCAGCCAGATCCATGGCGAGCACAACATCAGCAGCATTGAGCATGTTCCTTTCTGGCTCAACCACTAGTTTACATGGCAGCACTCTATCAAATTCAGGCCTCTTCTCTTCATTATCTAGTTCTGCCTCCACTGGTTTTGCTACGGTTTATCCATCTGCATCATGTCCTACTGTAACATTAGACTTAACCCTGCCCTCTAATAATTACTCAACCCAACCATTTCCATTGTCATTGCATGATGGTTACACTCAGCAATCTGAGGGGTTGTATTTGTCTTCTAAGCTTCCAACCTTGATACCCTCTGAGAAAAACCTTGCCTTGGTGGATGTTATCAGTGCAGCTATAACCAAGGATCCATCTATAAAGGCAGCATTGGTTGCAGCTGTTTCCTCAGTCACTGGTGCAACTCAGAACATCAATAACCACAGCCAGATTGGTAGAAATGCATCAACACTGAACCACTGA 1269 0.4129 MEGKVALKKLLQVQEMLYDNTDALNRTEEPSIKNTLLSLNMNNSDSPQNQEEQPVTQLDFLKIKLEEVKKENQNLRSMLNQISEHYGDLQNRLLLAIQQQLSSSHGNDDDLLANDDMEKPVLPTRQFLNSCNKRPSDGSTTKVFAYPENIEKNIGKNLKYAYNVEGKTNKQITTSQEAKIKEDQACVASCRKARVSIRARSDFSLMGDGCQWRKYGQKIAKGNPCPRAYYRCNMGTACPVRKQVQRCAVDETVLITTYEGNHNHPLPPAARSMASTTSAALSMFLSGSTTSLHGSTLSNSGLFSSLSSSASTGFATVYPSASCPTVTLDLTLPSNNYSTQPFPLSLHDGYTQQSEGLYLSSKLPTLIPSEKNLALVDVISAAITKDPSIKAALVAAVSSVTGATQNINNHSQIGRNASTLNH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00325 422 FunFam probable WRKY transcription factor 31 191 268 - -
Gabi2179g00325 422 Gene3D WRKY domain 190 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00325 422 Coils Coil 58 92 - -
Gabi2179g00325 422 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00325 422 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00325 422 SUPERFAMILY WRKY DNA-binding domain 199 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00325 422 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 412 IPR044810 GO:0003700
Gabi2179g00325 422 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00325 Gabi-Chr2179 2998338 3004648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00325 61 331 WRKY Transcription Factor Family AT4G04450 42.105 8.73e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi2179g00325 WRKY 1.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00325 - - gmx:100797109 447.973