Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00318 ATGGAAACATTAGAACAAATTGATGCTCATCAAACACAGTCATCATCATCATCATCTTCTTCAATTGATAGCAGCTACCACCCTTCTGGGACACCACCAGCTTCTTTCTCTTCATCTCTCTGCCTAACTAGTGTCTGCAGATATAGTAGCACCAGAAACAGAACTGATTTGAGCACTGACCTGAGACTTGGTCTTAGCATCTCTCCTTCTCAATCTGAACCAGAATTCAATTCAACACCAAGGGAACAAACTTTTGACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTAGTTAAGAGGCAACACCAACTGAGCCAAAGATCTTGTTTATTTATCAAAGTGTACATGGAAGGCATCCCCATCGGTAGAAAATTAAATCTGTTGGCACATCATAGCTATGATGAACTTGTAAAAGCTCTTGGCCATATGTTTAGGACCATCATTCTCTGCCCTAACCTTCAACCACTTAGTTCTGGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTAACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 603 0.4262 METLEQIDAHQTQSSSSSSSSIDSSYHPSGTPPASFSSSLCLTSVCRYSSTRNRTDLSTDLRLGLSISPSQSEPEFNSTPREQTFDWPPIKSILRSTLVKRQHQLSQRSCLFIKVYMEGIPIGRKLNLLAHHSYDELVKALGHMFRTIILCPNLQPLSSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00318 200 MobiDBLite consensus disorder prediction 1 37 - -
Gabi2179g00318 200 Pfam AUX/IAA family 62 196 IPR033389 -
Gabi2179g00318 200 Gene3D - 104 200 - -
Gabi2179g00318 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 57 198 IPR003311 GO:0005634|GO:0006355
Gabi2179g00318 200 ProSiteProfiles PB1 domain profile. 110 199 IPR000270 GO:0005515
Gabi2179g00318 200 SUPERFAMILY CAD & PB1 domains 104 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00318 Gabi-Chr2179 2960768 2961857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00318 100 200 B3 DNA Binding Superfamily AT2G46530 37.624 2.24e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi2179g00318 AUX_IAA 8.7e-36 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00318 K14484 - gmx:100818083 294.664