Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00309 ATGGAGATTGCTGGTGATAGTAATGTTGATGGAAGGAGTTACAACATGGAGGTCCAGAACAACGTGGGTGATGATGGGTCGGTGATGCATTTATCTGCTAACCGGCCACTGCCAACATCTGGAGTGAATGCAGGGATTCCTTGTACAACTCGGTTTAGCATCTTCTATAATGGAAGAATTTCTGTCTATAATGGAATTCCTGAAGAAAAGGTGCATGAAATAATGTTGATTGCTGCTGAAGCTGCCAAGTCTGCTAAAGTCAAGAGTGGGAACCCCTTCACTTCACTCATTCCCACTAGCCCTTCTTCTCCACAAGGAATCTCTAGTAATTTGCCTTCACCACAGTCAGTCTCCTTTCCTGCGGAGAAGAGTTCCATTTGCAGGCTGCAAGAATTTCCACTAGCTCGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGCGACGAAACAGATTGGGTAGCAAAGCCCCTTATGCCTCACCAACAACAAAAGCTGCTGAAAACATGGAGAACAACTTCTATGCTGACACTACTACACCAGATTTCAGCAAAGTTTTGCTGGCTCTTATGGGCAACTAG 576 0.4497 MEIAGDSNVDGRSYNMEVQNNVGDDGSVMHLSANRPLPTSGVNAGIPCTTRFSIFYNGRISVYNGIPEEKVHEIMLIAAEAAKSAKVKSGNPFTSLIPTSPSSPQGISSNLPSPQSVSFPAEKSSICRLQEFPLARRQSLQRFLEKRRNRLGSKAPYASPTTKAAENMENNFYADTTTPDFSKVLLALMGN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00309 191 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 32 166 IPR040390 -
Gabi2179g00309 191 Pfam tify domain 50 79 IPR010399 -
Gabi2179g00309 191 MobiDBLite consensus disorder prediction 96 116 - -
Gabi2179g00309 191 ProSiteProfiles Tify domain profile. 45 80 IPR010399 -
Gabi2179g00309 191 SMART tify_2 45 80 IPR010399 -
Gabi2179g00309 191 Pfam Jas motif 133 157 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00309 Gabi-Chr2179 2883957 2887597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00309 51 157 Tify Gene Family AT5G20900 44.037 2.72e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi2179g00309 tify 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00309 K13464 - gmx:100306655 185.267