Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2179g00308 | ATGTCAACAGATCCTCCTCCTTTCCAAGAAGCAGCACGATGTGTTGTCTGCAGTTGCAGTTTCAATACCTTCAGGAGAAGGCATCATTGTCGATCCTGCGGGAGAACATTGTGCAATGAACATTCATCAGATCAAATGGCGTTACCACAATTTGGAATATACTCAGATGTCCGAGTATGTGCTGATTGTTTCAACAATTCAGGAACTAGGAAGGATGTCCCACAGGCTTCTTCGGATGGTGTAAACAGTGTAACAGACACAATTTCTAAATTAGATATTGATGCAAATGTTGATTCACAAACCATACCAACTGCAGGGAATAAGCTTGTATCAGGCATTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATCTGTGAAGCTCCTACCCCTTCCTCTGCTGTAATCCCCCAGCAGAAGAGATCCAATCCAGTCATTACAGCTCCACCAAATCCTAAACCCAAGAAGACAGATACTGTTCCAAGAAATAGAAGCTCCGGTTCATCCAGCAAGTTTAGTTCTACGTTTAACCGTGGTCATGCAACCAATGGTACCTCAGACAAACCCCAGATTGATTATGAAGCTAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGATGTTGCTGCTGTCAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGAATGTCTTTATTGCATTTGGCTTCAGTATTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGTCTGGGATACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCTCCAGCTACTTTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGCGGAGCAATGAACCAAAGCATTTGA | 873 | 0.4192 | MSTDPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGIYSDVRVCADCFNNSGTRKDVPQASSDGVNSVTDTISKLDIDANVDSQTIPTAGNKLVSGIKECKCGMPLCICEAPTPSSAVIPQQKRSNPVITAPPNPKPKKTDTVPRNRSSGSSSKFSSTFNRGHATNGTSDKPQIDYEANGEGLREAIKNGDVAAVKKLLNEGVDANYRDKQGMSLLHLASVFNQTDIVFILMDSGASLGYKNAQGETPLDCAPATLQYKMRKKMEEGGAMNQSI | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2179g00308 | 290 | ProSiteProfiles | Ankyrin repeat region circular profile. | 227 | 258 | - | - | |
| Gabi2179g00308 | 290 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 2 | 284 | - | - | |
| Gabi2179g00308 | 290 | Gene3D | - | 175 | 275 | IPR036770 | - | |
| Gabi2179g00308 | 290 | ProSiteProfiles | Ankyrin repeat profile. | 227 | 259 | IPR002110 | GO:0005515 | |
| Gabi2179g00308 | 290 | SUPERFAMILY | FYVE/PHD zinc finger | 8 | 77 | IPR011011 | - | |
| Gabi2179g00308 | 290 | SUPERFAMILY | Ankyrin repeat | 199 | 270 | IPR036770 | - | |
| Gabi2179g00308 | 290 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 8 | 68 | IPR017455 | - | |
| Gabi2179g00308 | 290 | ProSiteProfiles | Ankyrin repeat profile. | 194 | 226 | IPR002110 | GO:0005515 | |
| Gabi2179g00308 | 290 | CDD | FYVE_scVPS27p_like | 7 | 64 | - | - | |
| Gabi2179g00308 | 290 | SMART | ANK_2a | 227 | 256 | IPR002110 | GO:0005515 | |
| Gabi2179g00308 | 290 | SMART | ANK_2a | 194 | 223 | IPR002110 | GO:0005515 | |
| Gabi2179g00308 | 290 | Pfam | FYVE zinc finger | 9 | 66 | IPR000306 | GO:0046872 | |
| Gabi2179g00308 | 290 | SMART | fyve_4 | 2 | 69 | IPR000306 | GO:0046872 | |
| Gabi2179g00308 | 290 | MobiDBLite | consensus disorder prediction | 133 | 190 | - | - | |
| Gabi2179g00308 | 290 | MobiDBLite | consensus disorder prediction | 160 | 189 | - | - | |
| Gabi2179g00308 | 290 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 69 | IPR013083 | - | |
| Gabi2179g00308 | 290 | Pfam | Ankyrin repeats (3 copies) | 201 | 268 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2179g00308 | Gabi-Chr2179 | 2877098 | 2881868 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2179g00308 | 206 | 285 | MAP Kinase Kinase Kinase | AT3G58760 | 33.750 | 1.43e-08 | 53.5 |