Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00307 ATGTCAACAGATCCTCCTCCTTTCCAAGAAGCAGCACGATGTGTTGTCTGCAGTTGCAGTTTCAATACCTTCAGGAGAAGGCATCATTGTCGATCCTGCGGGAGAACATTGTGCAATGAACATTCATCAGATCAAATGGCGTTACCACAATTTGGAATATACTCAGATGTCCGAGTATGTGCTGATTGTTTCAACAATTCAGGAACTAGGAAGGATGTCCCACAGGCTTCTTCGGATGGTGTAAACAGTGTAACAGACACAATTTCTAAATTAGATATTGATGCAAATGTTGATTCACAAACCATACCAACTGCAGGGAATAAGCTTGTATCAGGCATTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATCTGTGAAGCTCCTACCCCTTCCTCTGCTGTAATCCCCCAGCAGAGATCCAATCCAGTCATTACAGCTCCACCAAATCCTAAACCCAAGAAGACAGATACTGTTCCAAGAAATAGAAGCTCCGGTTCATCCAGCAAGTTTAGTTCTACGTTTAACCGTGGTCATGCAACCAATGGTACCTCAGACAAACCCCAGATTGATTATGAAGCTAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGATGTTGCTGCTGTCAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGAATGTCTTTATTGCATTTGGCTTCAGTATTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGTCTGGGATACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCTCCAGCTACTTTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGCGGAGCAATGAACCAAAGCATTTGA 870 0.4195 MSTDPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGIYSDVRVCADCFNNSGTRKDVPQASSDGVNSVTDTISKLDIDANVDSQTIPTAGNKLVSGIKECKCGMPLCICEAPTPSSAVIPQQRSNPVITAPPNPKPKKTDTVPRNRSSGSSSKFSSTFNRGHATNGTSDKPQIDYEANGEGLREAIKNGDVAAVKKLLNEGVDANYRDKQGMSLLHLASVFNQTDIVFILMDSGASLGYKNAQGETPLDCAPATLQYKMRKKMEEGGAMNQSI 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00307 289 ProSiteProfiles Ankyrin repeat profile. 226 258 IPR002110 GO:0005515
Gabi2179g00307 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Gabi2179g00307 289 MobiDBLite consensus disorder prediction 159 188 - -
Gabi2179g00307 289 Gene3D - 174 274 IPR036770 -
Gabi2179g00307 289 SMART ANK_2a 193 222 IPR002110 GO:0005515
Gabi2179g00307 289 SMART ANK_2a 226 255 IPR002110 GO:0005515
Gabi2179g00307 289 ProSiteProfiles Ankyrin repeat profile. 193 225 IPR002110 GO:0005515
Gabi2179g00307 289 ProSiteProfiles Ankyrin repeat region circular profile. 226 257 - -
Gabi2179g00307 289 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 2 283 - -
Gabi2179g00307 289 SUPERFAMILY FYVE/PHD zinc finger 8 77 IPR011011 -
Gabi2179g00307 289 SUPERFAMILY Ankyrin repeat 198 269 IPR036770 -
Gabi2179g00307 289 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 8 68 IPR017455 -
Gabi2179g00307 289 CDD FYVE_scVPS27p_like 7 64 - -
Gabi2179g00307 289 Pfam Ankyrin repeats (3 copies) 200 267 IPR002110 GO:0005515
Gabi2179g00307 289 Pfam FYVE zinc finger 9 66 IPR000306 GO:0046872
Gabi2179g00307 289 SMART fyve_4 2 69 IPR000306 GO:0046872
Gabi2179g00307 289 MobiDBLite consensus disorder prediction 133 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00307 Gabi-Chr2179 2877098 2881868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00307 205 284 MAP Kinase Kinase Kinase AT3G58760 33.750 1.36e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00307 - - gmx:100814367 511.531