Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00306 ATGGGCTTGTGCGTTATTGAGGACCCTATCTCTGGTTTGACAATAGGTCAAGCTATATACGAGGCAGCTCTAATCATTGCAGTTCTGAGATGGGTCTTGTGCTTGGTTTTCAAACTGATCAAAGATAGGAGGACTCGCTCTCTTCACACCCCACCTGAACCCTCTTCACAGATTATAAGAGACAACACTCTTCCGTTGACAACGTTTGGTGAGATTGTGGAGAGGCTGCCAGAAACAGACAACACATGTGCTGTTTGCTTGAACCACCTTAAAATGGAAGATGAGGTTAGGGAGCTCATGAACTGCTACCATGTCTTTCATAAGGAATGCATAGACACGTGGTTGGACTATGACCATGACCATGACCAAGATCATGATAACCACAACCCCACTTGTCCACTCTGTAGAGCACCTTTACTCACTTCTTATTGCTTGTCATCAGAAAGCTCAACATGTGTGCCTCCTCCTCAACCTAGCTGGGCTGTGGAGAGACTTTTATATCTCTTTGGGGATGATCTTCTCCCTTGTTAG 531 0.4539 MGLCVIEDPISGLTIGQAIYEAALIIAVLRWVLCLVFKLIKDRRTRSLHTPPEPSSQIIRDNTLPLTTFGEIVERLPETDNTCAVCLNHLKMEDEVRELMNCYHVFHKECIDTWLDYDHDHDQDHDNHNPTCPLCRAPLLTSYCLSSESSTCVPPPQPSWAVERLLYLFGDDLLPC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00306 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 143 IPR013083 -
Gabi2179g00306 176 SUPERFAMILY RING/U-box 76 142 - -
Gabi2179g00306 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 174 - -
Gabi2179g00306 176 ProSiteProfiles Zinc finger RING-type profile. 83 136 IPR001841 -
Gabi2179g00306 176 SMART ring_2 83 135 IPR001841 -
Gabi2179g00306 176 Pfam Ring finger domain 81 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00306 Gabi-Chr2179 2875302 2876292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00306 6 173 C3H Transcription Factor Family AT5G20885 49.162 1.66e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00306 K16281 - gmx:100306203 242.276