Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00298 ATGGCTCTTTCTTCATCCACAACACCCATTATCACACCAATCTTCTTGTTGATGATGTTGTTTCTTGGACTGTTCCCCCCATTGGATGCTGCTTCTCCCAGTGATTTGGTGGGATCAGCATGCCTCAAAGTTTCTCCTTCAGAATTCGTTGGTTCTGTTAGGGAAGTTATTGCTGTTTTACGACAAGTTTCATCCATCTTGTCGCGTTTCAGCAGTGTCTTCGGTGACTTCCGTCTTTCACATGCCGTTTCTGATTGCCTCGATTTGCTTGACATGTCCTCTGATGAACTCACCTGGTCTGTCTCCGCAACTCAAACTCCCAAAGGCAAGCATAATAGTACTGGGAACCTGAGCTCTGATTTGAGAACATGGTTAAGTGCTGTGCTTGCGAATCCGGAGACATGCATGGATGGATTCGAAGGTACAAATAGCATTGTGAAAGGTTTAGTATCCACTGGGCTTGGACAAGTTATGTCGTTGGTGAAACATCTTCTGACACAAGTGCACCCTGTCTCGGATAAATTCTCAACCAATAATGAAGGGGAATTTCCTTCGTGGGTTAAAGGTGGGGATAGGAAGCTACTACAAGCAAAAGGGGTGGCTGTGGATGCTGTTGTAGCTGCTGATGGGACTGGGAACTACACGAAGGTGATGGATGCGGTGGAAGCAGCACCTGAGTATAGCATGAAACGTTATGTGATATACATAAAAAAAGGTGTTTACATAGAGAATGTTGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGATGGTATGGATGCCACTATTATCTCCGGTAACCGGAGTTTTATCGGCGGTTGGACCACATTCCGATCAGCTACCTTTGCTGTCAGTGGCAGAGGGTTCATAGCACGAGACATTACCTTTCAGAACACTGCAGGGCCCGAGAAGCACCAAGCAGTAGCACTAAGATCAGACTCAGACCTCTCAGTCTTCTACCGATGTGGAATCTTTGGTTACCAAGACACCCTATACACTCACACCATGCGCCAATTCTACAGAGAATGCAAAATCAGTGGCACAGTTGATTTCATATTCGGAGACGCCACTGCTGTGTTCCAAAACTGCATAATACAAGCCAAGAAAGGCTTGCCAGATCAAAAGAACACAATCACAGCTCATGGGAGAAAAGACCCAAATGAACCAACTGGTTTCTCCATCCAATTCTGCAACATCTCTGCAGATTCTGACCTTCTGCCTTCAATTAACTCCACTCAAACATACCTTGGCAGACCCTGGAAGACATATTCACGAACCATTTTCATGCAATCCTACATGAGTAACGTGATAAGGCCACGAGGGTGGCTAGAGTGGAATGGAGATTTTGCTTTGGACACATTGTACTATGCTGAGTACATGAACTCTGGACTAGGTGCTGGTCTTGATAACCGAGTTAAATGGCCAGGGTACCATGCATTGAATGATTCTACCCAAGCTAGTAACTTCACGGTGGCTCAGTTTATTGAGGGGAATCTATGGTTACCTTCCACAGGTGTAACGTACACTGCTGGATTCACAGATTAA 1551 0.452 MALSSSTTPIITPIFLLMMLFLGLFPPLDAASPSDLVGSACLKVSPSEFVGSVREVIAVLRQVSSILSRFSSVFGDFRLSHAVSDCLDLLDMSSDELTWSVSATQTPKGKHNSTGNLSSDLRTWLSAVLANPETCMDGFEGTNSIVKGLVSTGLGQVMSLVKHLLTQVHPVSDKFSTNNEGEFPSWVKGGDRKLLQAKGVAVDAVVAADGTGNYTKVMDAVEAAPEYSMKRYVIYIKKGVYIENVEIKKKKWNIMMIGDGMDATIISGNRSFIGGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDTLYTHTMRQFYRECKISGTVDFIFGDATAVFQNCIIQAKKGLPDQKNTITAHGRKDPNEPTGFSIQFCNISADSDLLPSINSTQTYLGRPWKTYSRTIFMQSYMSNVIRPRGWLEWNGDFALDTLYYAEYMNSGLGAGLDNRVKWPGYHALNDSTQASNFTVAQFIEGNLWLPSTGVTYTAGFTD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00298 516 Gene3D - 198 514 IPR012334 -
Gabi2179g00298 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 169 IPR035513 -
Gabi2179g00298 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
Gabi2179g00298 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 161 IPR035513 -
Gabi2179g00298 516 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
Gabi2179g00298 516 SMART PMEI_2 32 164 IPR006501 GO:0004857
Gabi2179g00298 516 FunFam Pectinesterase 29 170 - -
Gabi2179g00298 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Gabi2179g00298 516 PANTHER PECTINESTERASE 63 504 - -
Gabi2179g00298 516 FunFam Pectinesterase 197 514 - -
Gabi2179g00298 516 CDD PMEI-like_4 28 172 - -
Gabi2179g00298 516 Pfam Plant invertase/pectin methylesterase inhibitor 65 153 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00298 Gabi-Chr2179 2802476 2806605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00298 12 514 Carbohydrate Esterase AT3G43270 64.410 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00298 K01051 - gmx:100777500 801.971