Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00297 ATGGCTACTTCATCTCCTAAACTCTTCCTTCTTCTCTTAACAATACTCTTCTCACATACTTGGGTTGTCAACTCCTCTGAATCTGATACTTACGTTTATAGCCAAAATTCTTCCTGCGTGACTACCCGAGACTCTGAAGTTTGCTATAATAATTCCACCTCAATACATGTAAGTCATGAAGGCACCAACATTAACATTAACAGCAACGGCAGCAGCAACAGCAACAGCAACAGCAACCTTCTTCAGTCACTCCAAGTAGCAATATCTGAAACCAAAAAGCTATCTGATCAATTCATCAATGCTGGATACCCAAACATCATAGAAAACAAAATAGGAGCAGTCCAAGACTGTAGGGAACTCCACCAATCCACCTTGGCTTCCTTAATACGATCACAATCAAGGATTAGTTCCCCAAACTCCAAAAATTTAATTGATGCAAGAACCTACCTCAGTGCAGCACTGACCAACAAGAACACATGCCTAGAAAGCCTACATTATGCTTCGGGTACCCTGAAGCAAGTTCTGGTGAATTCTGTGATCAACACTTACAAGCATGTCGGCAATTCTCTTTCAATGGTCCCTAAGCCTGAGATAAGGGTTCCCAAGCATAACCGGCGTTTGATGGGTGTTCCAACATGGTTGTCAAGCAAAGACCGTCGTTTCTTGCAAAGCACGGAACACGACCCTAAAGAAGTGCTTGTTGTGGCTGCTGATGGAACAGGAAACTTTAGCACCATCACTGAAGCTATCAGATTTGTTCCAAATAACAGCTTTTATAGGACAATGATCTATGTCAAAGAAGGGATTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTTCTCTGTTTGGCGATGGAAGTGACGCCACTGTTATCACCGGCAGCAGAAGCATGGATGGTGGCTGGACCACTTTCAAATCTGCAACTCTAGCGGTCTCTGGTGAAGGCTTTCTGGGACGTGATATAGGTTTTGAGAACAAAGCAGGGGCAGAGAAACATCAAGCAGTTGCATTGAGAGTGAATGCAGACAAGACTGCTTTTTACAGGTGTGCCATGCATGGTTACCAAGACACTCTTTACGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACGTTTATGGGACCATAGATTTCATATTTGGGAATGCAGCTGTGGTTTTACAAGCATGTAAAATTGAGTCCAGAATGCCACTTCCTGGCCAAATCACTGTCATTACTGCACAGTCCAGAGACACTCCTGATGAGGACACTGGCATCTCAATCCAAAACTGTTCTATTTTAGCTAACAAAGATTTGGATTCCAACATTGGCAGCTTCAAGAGCTACCTTGGGAGGCCATGGAAGCCTTATTCCCGTACTGTTTACCTTGAGTCCTACATTGATGATTTTATTGACCCAATGGGGTGGACAAAATGGTCTCTTGATCAAGTCTTGTTTGACAAACTGTATTTTGGAGAGTATAAGAATTATGGGCCTGGTGCAGGGATACAAAACCGAATAGAATGGCTTGGGTTCCATTCAATGAATTACGATAGTGCCTATGACTTCACAGTTTCAGAGTTCATTGCTCGTAGTGGTGATGACTGGCTTCGGAGTATTTCCTTGCCTTATGATGATGGCATTTAA 1638 0.4261 MATSSPKLFLLLLTILFSHTWVVNSSESDTYVYSQNSSCVTTRDSEVCYNNSTSIHVSHEGTNININSNGSSNSNSNSNLLQSLQVAISETKKLSDQFINAGYPNIIENKIGAVQDCRELHQSTLASLIRSQSRISSPNSKNLIDARTYLSAALTNKNTCLESLHYASGTLKQVLVNSVINTYKHVGNSLSMVPKPEIRVPKHNRRLMGVPTWLSSKDRRFLQSTEHDPKEVLVVAADGTGNFSTITEAIRFVPNNSFYRTMIYVKEGIYEENVEIPSYKTNISLFGDGSDATVITGSRSMDGGWTTFKSATLAVSGEGFLGRDIGFENKAGAEKHQAVALRVNADKTAFYRCAMHGYQDTLYVHSFRQFYRECDVYGTIDFIFGNAAVVLQACKIESRMPLPGQITVITAQSRDTPDEDTGISIQNCSILANKDLDSNIGSFKSYLGRPWKPYSRTVYLESYIDDFIDPMGWTKWSLDQVLFDKLYFGEYKNYGPGAGIQNRIEWLGFHSMNYDSAYDFTVSEFIARSGDDWLRSISLPYDDGI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00297 545 Pfam Pectinesterase 233 527 IPR000070 GO:0030599|GO:0042545
Gabi2179g00297 545 Gene3D - 227 545 IPR012334 -
Gabi2179g00297 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 195 IPR035513 -
Gabi2179g00297 545 SUPERFAMILY Pectin lyase-like 230 539 IPR011050 -
Gabi2179g00297 545 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Gabi2179g00297 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 194 IPR035513 -
Gabi2179g00297 545 SMART PMEI_2 50 192 IPR006501 GO:0004857
Gabi2179g00297 545 PANTHER PECTINESTERASE 17 535 - -
Gabi2179g00297 545 CDD PMEI-like_3 37 196 - -
Gabi2179g00297 545 FunFam Pectinesterase 226 545 - -
Gabi2179g00297 545 Pfam Plant invertase/pectin methylesterase inhibitor 37 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00297 Gabi-Chr2179 2791175 2793251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00297 34 545 Carbohydrate Esterase AT2G26440 58.444 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00297 - - gmx:100776969 703.745