Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00273 ATGTTTTCAGTTTTTAGCCCTCGTAGCGATCTATTGCATGTCAAAGGCGCAGTGTTTCTTATGGGCACAGTGTTTGTGATGACATTATTATCAAATGAAAAAGGTAATGGTGGGGATGAGTTAGAAGAAAAAGATATTTTAAAGAAAGGGCCATGGACAGCAGAAGAGGATAAAATTTTGAAGGAATATGTGAAAAACCATGGAGAGGGAAATTGGAATGCAGTTCAAAAGAAATCAGGACTTGCCCGTTGTGGAAAAAGCTGCCGTTTTCGATGGACAAATCACTTGAGACCAGATTTGAAGAAGGGTCCCATGAGTAAAGAGGAAGAGCTTAAGATCATTGAACTCCATGCTGATATGGGGCCCAAATGGGCTAAAATGGCTTCGGAGTTGCCTGGACGTACTGACAATGAGATAAAGAACTATTGGAACACAAGAAAAAAGAAACTTGAACGAGCTGGCGCACCAATGTACCCTCCTAACATACGCCCACGTGTGCTTAATGCCACTCAACAAAGTCTAAAGGGTTCCAGCAGCCACCAACAAGCAGATAAATTTGTTATACTAAACAACAACCTCAGTCAAGAACTTCCACCATATGTATCACCAATCAATTATATATATGAAAGCAACACATTTGAACAAGGTCCAAGCTCATCATCACATTTGGACAGCACTAATACTGTTGCCCCAGTATTAGTTGATTATGAGCAATATGCAGGTTTAAATGGCACTTCCTACATAGCTGAGGCCATGGTATCAGACCTACCTCCACTTCCATGCAGGCCTGCATCTCCTATTCTTCCATCAGTAATTGATGGGTCTCTCAGTAGACTGATTCAGGATCCAGATTCAATAACTCCCACCATATATGGGGAATTGGTATCAGAGCTACCTCCACTCCCAGGCATAGAATTTCAACAAGAAGGTTGCTCATGTAGCATGCCTCCATTCTATCATGGGTCTGGTGATAGATTGATTGATAAGCACTATCCTCCAATTCATGAACAGACTCAGTTAGAACCAGTTTCTCCACGCAGCAATGGTTATTTGGAATCGATACTCTACCCTCCAAAGATTTTGGAAGGCTCAGGTAATAAGAAGAATTCATCTCATCCCTGTGAGAAAGAATTGGATGAGCAAGGGAAACATTCGAACCCCAAAGAAATTACAAGTCTGGATGATTTAGCTGATTTTGTTTGGTTAGAGAATGAAACAGTGAGTGACAAGGATCAATCTCCTACGGATGATGATTTCTTCTCATTTTTTGGTACAGATTGCAATGATTTATTATAG 1296 0.4082 MFSVFSPRSDLLHVKGAVFLMGTVFVMTLLSNEKGNGGDELEEKDILKKGPWTAEEDKILKEYVKNHGEGNWNAVQKKSGLARCGKSCRFRWTNHLRPDLKKGPMSKEEELKIIELHADMGPKWAKMASELPGRTDNEIKNYWNTRKKKLERAGAPMYPPNIRPRVLNATQQSLKGSSSHQQADKFVILNNNLSQELPPYVSPINYIYESNTFEQGPSSSSHLDSTNTVAPVLVDYEQYAGLNGTSYIAEAMVSDLPPLPCRPASPILPSVIDGSLSRLIQDPDSITPTIYGELVSELPPLPGIEFQQEGCSCSMPPFYHGSGDRLIDKHYPPIHEQTQLEPVSPRSNGYLESILYPPKILEGSGNKKNSSHPCEKELDEQGKHSNPKEITSLDDLADFVWLENETVSDKDQSPTDDDFFSFFGTDCNDLL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00273 431 MobiDBLite consensus disorder prediction 369 389 - -
Gabi2179g00273 431 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Gabi2179g00273 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
Gabi2179g00273 431 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 35 393 - -
Gabi2179g00273 431 Gene3D - 104 182 - -
Gabi2179g00273 431 SMART sant 101 149 IPR001005 -
Gabi2179g00273 431 SMART sant 48 98 IPR001005 -
Gabi2179g00273 431 CDD SANT 51 96 IPR001005 -
Gabi2179g00273 431 Gene3D - 48 101 - -
Gabi2179g00273 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 151 IPR017930 -
Gabi2179g00273 431 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Gabi2179g00273 431 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Gabi2179g00273 431 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Gabi2179g00273 431 CDD SANT 104 147 IPR001005 -
Gabi2179g00273 431 SUPERFAMILY Homeodomain-like 48 143 IPR009057 -
Gabi2179g00273 431 MobiDBLite consensus disorder prediction 361 389 - -
Gabi2179g00273 431 FunFam MYB-related transcription factor 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00273 Gabi-Chr2179 2562933 2565256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00273 36 222 MYB Transcription Factor Family AT3G11440 50.249 1.64e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2179g00273 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00273 K09422 - qsa:O6P43_014646 244.202