Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00267 ATGGGTCTCAAACAAAGCCGTCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCCGCCCAAGAGCTTGTTGCCAAAGATTTGCATGACAATACTTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACATCTTTTAGGTTTAAAGCGTGCTAATAGACAGCAGCCAGGACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATACTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAACTTTCACTTGGAATGAGATTTAGAATGATGTTTGAAACCGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTCAGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGCGATCGCCCAAGCAGAGTTTCAATTTGGGAAATAGAGCCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTGTGCCCTGGCTTGGAGATGACTTTGGCATGAAGGAAGCCTCAAGTTCAGTCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTTCACCTAATACTCTGCAAAGTAACCTTAGCACTGATGACCCATCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTGAATCGAGTCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAGCAGTCCCCAGCATCATGGCCTCAGCAGCAACAACAACTGCAGCAGCAGCAGCAACAACAACTGCAGCAACAGCAACAACAGCAGCTACATCATCAACAACAGCAACAACATCAGCTGCAGCAACAGCAGCAGCAGCAGCAACAGCAACAACAACAGCTACATCATCAGCAACAGCAACAACATCAGCTGCAGCAACAACAACAGCAGCAGCAGCTGCAGTCATTGTTGCAAATACCTATGAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAACCTGCCATTGATGCAGCAACAACTGCCTCAGCAGATGGGACAGCAGCCACAGAAACAGCAACAGCAACAGCAACAGTCATGTCAAAATACTATTATGAATAATGGTGTAGTTGCTTCTAACCAGATTACAAATCAGTTTGTACAGCAACCAGTAGGCTACGCTCAGCTTCAGCAACAGCAATTACTCTCAGGAGGTATTCCAGCCCAGCAAAGTATCCAGCCGGCTAGTAAGAATACATTCCCACTGACATCCCTAACACAAGACTCGCAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAACAATCTCCAATGCGGTTGTTACAACAAAGCCTGCCACAGAGGGAGCCACCAGTGACTCAAATGTCACAGCAAAACCCCTCGGAGCAACAACTACAGCTACAGTTGCTAAAGAAATTGCAGCAACAACAGCAGCAGCAGCAACTTCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATATTCACCAACAGAACCAGCAATTACTGCAGCTTCCTATATCTCAGCATCAACCTCTACAGCTTGGCAATAATGCCTTCTCAACAGAGAAGCTTCTCAATAGCAACAATTTCTCTTCTTCAGCTCTTGTACAGTCACAACAGCTTCCTGCGAATCAATCCCAGAATACACAGAAATCACTTACAATTACTAGAGCTCCCTCTACACTTACAGATGGAGATACCCCCTCATGCTCAACCTCACCATCTACTAATAACTGCCAGATATCTCCATCAAACCTCCTAAAAAGAAATCAACAAGTACCAGCCACATTAGGGAGGAGTTTGGTAGTTGAACCCACTAGTAATCTGATTCAGGAGCTTCAGAGTAAGTCTGACATGCAGATCAAACACGAGTTCCCCAGTGTAAAAGGACCTGACCAGCTAAAGTATAAAGGGACAATTACTGATCATCTGGAAGCTTCTTCTTCTGGAACATCTTATTGTCTTGATCCTGCTAACGTCCAGCAGAACTTGCCATTTTCCAACTTCTGCATGGATGGGGATGTCCAATCTCACCCTAGAAACAATCTACCATTCGATAATCTTGATGGTCTATCGCCTGATACTATGCTTTTAAGGGGATATGATTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCATTTGGAGTTCCAAGCATGCCTTTTAAGCCTGGTTGCTCAAGTGATGTTGGCATAAATGATACTGGGGTTTTGAATAATGGCTTGCGGGCTAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACATGGGATATGATGAACTCCGGCATGATTTGGCCCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCTTCAAAGGACTGACTGGAAACTAGTTTATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGTTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACTGACAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTTAATAGGTAA 3153 0.4412 MGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQHLLGLKRANRQQPGLSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQLSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGDRPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAVPWLGDDFGMKEASSSVFPGLSLVQWMSMQQNNQFSAAQSGCFPSMLSPNTLQSNLSTDDPSKLLSFQAPVLSESSLQFNKPNLPNQINQLQQSPASWPQQQQQLQQQQQQQLQQQQQQQLHHQQQQQHQLQQQQQQQQQQQQQLHHQQQQQHQLQQQQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLMQQQLPQQMGQQPQKQQQQQQQSCQNTIMNNGVVASNQITNQFVQQPVGYAQLQQQQLLSGGIPAQQSIQPASKNTFPLTSLTQDSQFQQQIDQQASLLQRQQQQTQLQQSPMRLLQQSLPQREPPVTQMSQQNPSEQQLQLQLLKKLQQQQQQQQLLSTSSPLLQSQLLQQQNIHQQNQQLLQLPISQHQPLQLGNNAFSTEKLLNSNNFSSSALVQSQQLPANQSQNTQKSLTITRAPSTLTDGDTPSCSTSPSTNNCQISPSNLLKRNQQVPATLGRSLVVEPTSNLIQELQSKSDMQIKHEFPSVKGPDQLKYKGTITDHLEASSSGTSYCLDPANVQQNLPFSNFCMDGDVQSHPRNNLPFDNLDGLSPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPSMPFKPGCSSDVGINDTGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYMGYDELRHDLARMFGIEGQLEDLQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGQYDDNSAASFNR 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00267 1050 FunFam Auxin response factor 11 115 - -
Gabi2179g00267 1050 Gene3D - 918 1012 - -
Gabi2179g00267 1050 SUPERFAMILY CAD & PB1 domains 934 1001 - -
Gabi2179g00267 1050 ProSiteProfiles B3 DNA-binding domain profile. 13 115 IPR003340 GO:0003677
Gabi2179g00267 1050 ProSiteProfiles PB1 domain profile. 923 1016 IPR000270 GO:0005515
Gabi2179g00267 1050 Coils Coil 394 438 - -
Gabi2179g00267 1050 Gene3D - 11 114 IPR015300 -
Gabi2179g00267 1050 FunFam Auxin response factor 176 248 - -
Gabi2179g00267 1050 CDD B3_DNA 12 104 IPR003340 GO:0003677
Gabi2179g00267 1050 Pfam Auxin response factor 139 221 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi2179g00267 1050 SMART B3_2 13 115 IPR003340 GO:0003677
Gabi2179g00267 1050 MobiDBLite consensus disorder prediction 708 737 - -
Gabi2179g00267 1050 Pfam B3 DNA binding domain 13 108 IPR003340 GO:0003677
Gabi2179g00267 1050 FunFam Auxin response factor 918 1012 - -
Gabi2179g00267 1050 Pfam AUX/IAA family 920 1009 IPR033389 -
Gabi2179g00267 1050 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 497 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi2179g00267 1050 SUPERFAMILY DNA-binding pseudobarrel domain 4 142 IPR015300 -
Gabi2179g00267 1050 Gene3D - 176 247 - -
Gabi2179g00267 1050 MobiDBLite consensus disorder prediction 1028 1050 - -
Gabi2179g00267 1050 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00267 Gabi-Chr2179 2445557 2451564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00267 1 376 B3 DNA Binding Superfamily AT1G19220 81.698 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi2179g00267 AUX_IAA 8.6e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00267 K14486 - gmx:100805456 704.516