Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00266 ATGAAGACTCCACCCAATGGTTACTTGCCTAATTCTGGCGAAGGAGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGACACAGTGAGCAAGTTGCAGCGTCCATGCAAAAGGAGACTGACTTCATACCCAGTTACCCTAACCTTCCGTCCAAGTTGATTTGCATGCTTCATAATGTTGCCCTGCATGCTGATCCTGAAACAGATGAGGTCTATGCCCAGATGACTCTTCAACCTGTAAATAAATATGAAAAGGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAGCCGTCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCCGCCCAAGAGCTTGTTGCCAAAGATTTGCATGACAATACTTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACATCTTTTAGGTTTAAAGCGTGCTAATAGACAGCAGCCAGGACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATACTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAACTTTCACTTGGAATGAGATTTAGAATGATGTTTGAAACCGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTCAGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGCGATCGCCCAAGCAGAGTTTCAATTTGGGAAATAGAGCCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTGTGCCCTGGCTTGGAGATGACTTTGGCATGAAGGAAGCCTCAAGTTCAGTCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTTCACCTAATACTCTGCAAAGTAACCTTAGCACTGATGACCCATCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTGAATCGAGTCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAGCAGTCCCCAGCATCATGGCCTCAGCAGCAACAACAACTGCAGCAGCAGCAGCAACAACAACTGCAGCAACAGCAACAACAGCAGCTACATCATCAACAACAGCAACAACATCAGCTGCAGCAACAGCAGCAGCAGCAGCAACAGCAACAACAACAGCTACATCATCAGCAACAGCAACAACATCAGCTGCAGCAACAACAACAGCAGCAGCAGCTGCAGTCATTGTTGCAAATACCTATGAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAACCTGCCATTGATGCAGCAACAACTGCCTCAGCAGATGGGACAGCAGCCACAGAAACAGCAACAGCAACAGCAACAGTCATGTCAAAATACTATTATGAATAATGGTGTAGTTGCTTCTAACCAGATTACAAATCAGTTTGTACAGCAACCAGTAGGCTACGCTCAGCTTCAGCAACAGCAATTACTCTCAGGAGGTATTCCAGCCCAGCAAAGTATCCAGCCGGCTAGTAAGAATACATTCCCACTGACATCCCTAACACAAGACTCGCAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAACAATCTCCAATGCGGTTGTTACAACAAAGCCTGCCACAGAGGGAGCCACCAGTGACTCAAATGTCACAGCAAAACCCCTCGGAGCAACAACTACAGCTACAGTTGCTAAAGAAATTGCAGCAACAACAGCAGCAGCAGCAACTTCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATATTCACCAACAGAACCAGCAATTACTGCAGCTTCCTATATCTCAGCATCAACCTCTACAGCTTGGCAATAATGCCTTCTCAACAGAGAAGCTTCTCAATAGCAACAATTTCTCTTCTTCAGCTCTTGTACAGTCACAACAGCTTCCTGCGAATCAATCCCAGAATACACAGAAATCACTTACAATTACTAGAGCTCCCTCTACACTTACAGATGGAGATACCCCCTCATGCTCAACCTCACCATCTACTAATAACTGCCAGATATCTCCATCAAACCTCCTAAAAAGAAATCAACAAGTACCAGCCACATTAGGGAGGAGTTTGGTAGTTGAACCCACTAGTAATCTGATTCAGGAGCTTCAGAGTAAGTCTGACATGCAGATCAAACACGAGTTCCCCAGTGTAAAAGGACCTGACCAGCTAAAGTATAAAGGGACAATTACTGATCATCTGGAAGCTTCTTCTTCTGGAACATCTTATTGTCTTGATCCTGCTAACGTCCAGCAGAACTTGCCATTTTCCAACTTCTGCATGGATGGGGATGTCCAATCTCACCCTAGAAACAATCTACCATTCGATAATCTTGATGGTCTATCGCCTGATACTATGCTTTTAAGGGGATATGATTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCATTTGGAGTTCCAAGCATGCCTTTTAAGCCTGGTTGCTCAAGTGATGTTGGCATAAATGATACTGGGGTTTTGAATAATGGCTTGCGGGCTAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACATGGGATATGATGAACTCCGGCATGATTTGGCCCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCTTCAAAGGACTGACTGGAAACTAGTTTATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGTTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACTGACAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTTAATAGGTAA 3492 0.4422 MKTPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQHLLGLKRANRQQPGLSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQLSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGDRPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAVPWLGDDFGMKEASSSVFPGLSLVQWMSMQQNNQFSAAQSGCFPSMLSPNTLQSNLSTDDPSKLLSFQAPVLSESSLQFNKPNLPNQINQLQQSPASWPQQQQQLQQQQQQQLQQQQQQQLHHQQQQQHQLQQQQQQQQQQQQQLHHQQQQQHQLQQQQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLMQQQLPQQMGQQPQKQQQQQQQSCQNTIMNNGVVASNQITNQFVQQPVGYAQLQQQQLLSGGIPAQQSIQPASKNTFPLTSLTQDSQFQQQIDQQASLLQRQQQQTQLQQSPMRLLQQSLPQREPPVTQMSQQNPSEQQLQLQLLKKLQQQQQQQQLLSTSSPLLQSQLLQQQNIHQQNQQLLQLPISQHQPLQLGNNAFSTEKLLNSNNFSSSALVQSQQLPANQSQNTQKSLTITRAPSTLTDGDTPSCSTSPSTNNCQISPSNLLKRNQQVPATLGRSLVVEPTSNLIQELQSKSDMQIKHEFPSVKGPDQLKYKGTITDHLEASSSGTSYCLDPANVQQNLPFSNFCMDGDVQSHPRNNLPFDNLDGLSPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPSMPFKPGCSSDVGINDTGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYMGYDELRHDLARMFGIEGQLEDLQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGQYDDNSAASFNR 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00266 1163 Gene3D - 123 227 IPR015300 -
Gabi2179g00266 1163 MobiDBLite consensus disorder prediction 471 497 - -
Gabi2179g00266 1163 FunFam Auxin response factor 1031 1125 - -
Gabi2179g00266 1163 SUPERFAMILY CAD & PB1 domains 1047 1114 - -
Gabi2179g00266 1163 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gabi2179g00266 1163 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi2179g00266 1163 Gene3D - 289 360 - -
Gabi2179g00266 1163 MobiDBLite consensus disorder prediction 1141 1163 - -
Gabi2179g00266 1163 FunFam Auxin response factor 289 361 - -
Gabi2179g00266 1163 CDD B3_DNA 125 217 IPR003340 GO:0003677
Gabi2179g00266 1163 ProSiteProfiles PB1 domain profile. 1036 1129 IPR000270 GO:0005515
Gabi2179g00266 1163 FunFam Auxin response factor 124 228 - -
Gabi2179g00266 1163 Pfam AUX/IAA family 1033 1122 IPR033389 -
Gabi2179g00266 1163 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gabi2179g00266 1163 MobiDBLite consensus disorder prediction 821 850 - -
Gabi2179g00266 1163 Pfam B3 DNA binding domain 126 221 IPR003340 GO:0003677
Gabi2179g00266 1163 Coils Coil 507 551 - -
Gabi2179g00266 1163 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1125 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi2179g00266 1163 Gene3D - 1031 1125 - -
Gabi2179g00266 1163 SMART B3_2 126 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00266 Gabi-Chr2179 2445557 2454094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00266 1 489 B3 DNA Binding Superfamily AT1G19220 82.449 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi2179g00266 AUX_IAA 9.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00266 K14486 - gmx:100805456 919.457