Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00261 ATGCAGCAACAGAGGTTAAGACAGCATGCCATGATGCAGCCCTCTCTTTACCATCACCCTGCTCTTCTTACTTCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTAGGCAACATTCATCCTCAGGTTACAGAATCCCTTCTTCAAGAGCTTTTTTCAAGTGTAGGCGCCCTTGAAGGATGCAAGCTTATTCGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGAAGTTCAGCTGCATTTGCTATTGTAACTCTTAATGGGATGAATATTTTTGGGCAGATTATTAAAGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACGTCAGGTCATTTTAATGTTTTTGTTGGTGACCTTAGTCCTGAGGTTACAGACGCAACATTGTATGCTTGCTTTTCTGTATATCCTACTTGTTCAGATGCGAGGGTAATGTGGGATCAGAAGACAGGTCGTTCAAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGAAAGTGGCTTGGAAGCAGACAGATTCGGTGTAATTGGGCTACAAAAGGGGCTAGTTCCAGTGATGAAAAGCAGAATTCAGATTCTAGAAGTGTCGTTGAGTTAACTAATGGAACATCTGAAGAAGGCCAGGAAATAACCAATGATGACACTCCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCAGCATCATTTTCATGCCCTTGGTGCTGGAACTATTGGAGATGTTAGAGTACAAAGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACACATGCGGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGGTTTCTGTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGAACCGCCTCTACTCCTCTTCCCCCACCAACTTCTGCACATATGCCAGACTTTTCACTTGCCGGTCTTGCAGCATATGAACGCCAGATGGCTTTGACCAGAATGGGTGGCGCACATGCCCTTATGCATCATCAGCAGGGTCAGCATGCCCTAAAGCAAGCAGCCATGGGAATGGGTGCTTCTGGGGCTGCTTATGGTACGGGATTCCCTAGTGTTGCATCCTCCCAGCACCTAATGTACTATCAGTAA 1239 0.4528 MQQQRLRQHAMMQPSLYHHPALLTSPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTESLLQELFSSVGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGMNIFGQIIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLYACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASSSDEKQNSDSRSVVELTNGTSEEGQEITNDDTPEKNPQYTTVYVGNLAPEVTSVDLQHHFHALGAGTIGDVRVQRDKGFGFVRYSTHAEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPTSAHMPDFSLAGLAAYERQMALTRMGGAHALMHHQQGQHALKQAAMGMGASGAAYGTGFPSVASSQHLMYYQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00261 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 240 328 - -
Gabi2179g00261 412 Gene3D - 229 330 IPR012677 -
Gabi2179g00261 412 Gene3D - 39 124 IPR012677 -
Gabi2179g00261 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Gabi2179g00261 412 MobiDBLite consensus disorder prediction 208 248 - -
Gabi2179g00261 412 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Gabi2179g00261 412 CDD RRM2_PUB1 130 209 - -
Gabi2179g00261 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 113 IPR000504 GO:0003723
Gabi2179g00261 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Gabi2179g00261 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Gabi2179g00261 412 SUPERFAMILY RNA-binding domain, RBD 243 331 IPR035979 GO:0003676
Gabi2179g00261 412 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Gabi2179g00261 412 SUPERFAMILY RNA-binding domain, RBD 124 223 IPR035979 GO:0003676
Gabi2179g00261 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Gabi2179g00261 412 FunFam Oligouridylate-binding protein 1C 229 330 - -
Gabi2179g00261 412 SMART rrm2_1 132 205 IPR003954 GO:0003676
Gabi2179g00261 412 SMART rrm1_1 47 116 IPR000504 GO:0003723
Gabi2179g00261 412 SMART rrm1_1 253 322 IPR000504 GO:0003723
Gabi2179g00261 412 SMART rrm1_1 132 205 IPR000504 GO:0003723
Gabi2179g00261 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Gabi2179g00261 412 Gene3D - 125 225 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00261 Gabi-Chr2179 2396789 2412126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00261 47 320 Eukaryotic Initiation Factors Gene Family AT3G16380 27.148 3.49e-18 84.7