Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00260 ATGTCGAGCTCATCGGAGTATTCGGGGTTTTCCGGCAATCAGCCGGCGAAGTCGCAGGAGAAGTCCTCATTCTCCCAGACTTGTAGTCTATTGAGCCAATACCTCAAGGAGAAGGGCAGCTTCGGAGACCTTACCCTCGGGATAACATGCAACACCGAAACAAATGGGTCCTCTGAGACATCATGTCACTCTGCAACAACCATGGAGCTGTTTCCTACCAACGTGACACCACAACAAAACCTGACAACTATGGATTTGCTCTCTCCACAAGCTGCTTATCCTCGCCACACTGAGGTTCCAACCTTGGTAAACTCAAGTGCATTTAAGTCTACAGAGAAGGAACCTAAATCTGCACAGTTGACAATGTTTTATGCTGGGCAAGTTATTGTATTTGATGATTTTCCCGCTCACAAAGTGGAGGAGATGATGGCATTTGCCACCAAAGGAATCTCCCAAAGCCAAAATTCCTCTGCTGCTTATACTTCCACTCACAGTCAGCCTTCGATTATTCCTAATATCAACCCTCAAATACCATCCAGACCAATTCTTTGTGACCTACCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTGGAGAAGAGGAAAGATAGAATTGCTGCCAAAGCACCATATAAAACAAGCAATCCCATCACGGCCCCTAATAAGCCGGTTGAATCCATGTCATGGCTTGGATTGGGTGCTAAATCAACACAAATCTAA 720 0.4569 MSSSSEYSGFSGNQPAKSQEKSSFSQTCSLLSQYLKEKGSFGDLTLGITCNTETNGSSETSCHSATTMELFPTNVTPQQNLTTMDLLSPQAAYPRHTEVPTLVNSSAFKSTEKEPKSAQLTMFYAGQVIVFDDFPAHKVEEMMAFATKGISQSQNSSAAYTSTHSQPSIIPNINPQIPSRPILCDLPIARKASLHRFLEKRKDRIAAKAPYKTSNPITAPNKPVESMSWLGLGAKSTQI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00260 239 SMART tify_2 113 148 IPR010399 -
Gabi2179g00260 239 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 218 IPR040390 -
Gabi2179g00260 239 Pfam Jas motif 187 211 IPR018467 -
Gabi2179g00260 239 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
Gabi2179g00260 239 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2179g00260 239 Pfam tify domain 114 146 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00260 Gabi-Chr2179 2391400 2393576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00260 1 235 Tify Gene Family AT1G19180 42.188 1.21e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi2179g00260 tify 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00260 K13464 - gmx:100802800 332.798