Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00258 ATGGCCGCTGTTCGCTTCCTTCTCTTACCTCTCTCCCTCCTCCTCGCTCTCTCTCTCTCTCCTCTTTCCCTCTCCGTTTCAGAAAACGAAGCCCTCCTCAAGCTCAAACAATCATTCACAGATTCACAGTCTCTATCATCTTGGGTTCCGAATCAGAACCCTTGTTCTTCTAGGTGGGTTGGAGTCATCTGTTTCAACAACGTTATCACAAGCCTTCACCTCGCCGACTTGGGTCTCTCTGGCAACATTGATATCGAAGCTCTCATGGAGATTCGAACCTTGAGAACTATCAGCTTCGTTAATAACTCCTTCTCTGGTCCAATGCCAGAATTCAACAAACTCGGTGCTCTCAAGGCTATTTATTTATCAACGAATCAATTTTCAGGTCCTATTCCTCCAGATTTCTTCTCCCATTTAGCCTCATTGAAGAAACTATGGATCTCCGGCAACAAATTCTCCGGTGAAATACCCGTTTCCTTAACGAAACTTCGGTTCCTGAGCGAATTGCACCTCGAGGGAAACGAGTTTTCAGGGCCTGTACCAGAACTGACACAAGATATTAAATCACTGGGCATGTCGAACAACAAGTTACAAGGAGAAATACCAAGTAGCATGTCGAGATTCGGTGCCAACTCATTCTCCGGCAATGAAGGACTTTGCGGGAAGCCTCTGGATAAGGAGTGTGATGGATCTTTGCAGTTGCCGCCAACCGGTGGTGGTGGTGGTGATGGACAACAAGGATCAAGTTGGTTCGCGCAGGTTGTTATGGTCCTTGTTCTTGCGGCTATTGTGGGTGCGTTATTCATGTTCCTAAAGTCAAGGCGTGATGCACGTGACGATGACTTCAGCGTCGCGAGCAGAGACACTAACGTGGATCAGGTGGTGGAAGTGCACGTGCCGAGCTCCAAACATAGCAGCAGGGCAGCTTCGGAAACAAGCAGAAAGGAATCGAAAAAAGCATCGTCGAGGAGCGGCATGGGTGACCTTCTAATGGTGAATGACGAAAAGGGTGTGTTTGGTTTGCCAGATTTAATGAAGGCTGCTGCTGAGGTTTTGGGAAATGGTGGGTTGGGTTCTGCTTACAAAGCCGCCATGGCCAATGGCTTATCTGTTGTCGTCAAACGTATGCGAGAAATGAATAATGTAAGCAGAGACATATTTGATGCTGAGATGAGACGCTTTGGAAGACTCAGAAACCGCAACATTATCACCCCTCTGGCTTATCATTACCGCAGGGAGGAGAAGTTATTTATCACAGAATACATGCCCAAAGGAAGCTTGTTATATGTTTTGCATGGTGACAGAGGAACAAGTCATGCTGAATTGAATTGGCCTACCCGATTGAAGATTGTGAAGGGAATTGCAAGAGGGTTGGGGTTTCTTTATTCTGAATTTTCATCCGAAGAACTGCCACATGGGAACCTTAAATCGAGCAATGTTCTACTAACTGATAATTATGAGCCTCTCCTTAGCGACTTTGCCTTTCATCAACTCATCAACCCCAACTATGCCATACAAACCATGTTTGCCTATAAAACTCCTGATTTTACAGCATACCAACAAGTTTCGCAGAAGACTGATGTTTATTGCCTTGGAATTATCATTCTTGAAATCATTACAGGGAAATTTCCTTCTCAGTATCACAGTAATGGCAAGGGTGGGACTGATGTAGTGCAATGGGTATTCCAAGCAATTTCAGAGAGAAGAGAGGCAGAATTGATTGATCCAGAGTTGACAAGCAATAGCAATGGAAATTCAGTGAATCAAATGCTGCAACTTCTCCAAATTGGGGCTGCTTGCACGGAGGGCAACCCTGAACAACGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTACAGGTTTAA 1872 0.4546 MAAVRFLLLPLSLLLALSLSPLSLSVSENEALLKLKQSFTDSQSLSSWVPNQNPCSSRWVGVICFNNVITSLHLADLGLSGNIDIEALMEIRTLRTISFVNNSFSGPMPEFNKLGALKAIYLSTNQFSGPIPPDFFSHLASLKKLWISGNKFSGEIPVSLTKLRFLSELHLEGNEFSGPVPELTQDIKSLGMSNNKLQGEIPSSMSRFGANSFSGNEGLCGKPLDKECDGSLQLPPTGGGGGDGQQGSSWFAQVVMVLVLAAIVGALFMFLKSRRDARDDDFSVASRDTNVDQVVEVHVPSSKHSSRAASETSRKESKKASSRSGMGDLLMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNNVSRDIFDAEMRRFGRLRNRNIITPLAYHYRREEKLFITEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLGFLYSEFSSEELPHGNLKSSNVLLTDNYEPLLSDFAFHQLINPNYAIQTMFAYKTPDFTAYQQVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFQAISERREAELIDPELTSNSNGNSVNQMLQLLQIGAACTEGNPEQRLNMKEAIRRIEEVQV 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00258 623 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00258 623 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 622 IPR046959 -
Gabi2179g00258 623 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Gabi2179g00258 623 Pfam Protein kinase domain 350 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00258 623 MobiDBLite consensus disorder prediction 308 322 - -
Gabi2179g00258 623 Gene3D Phosphorylase Kinase; domain 1 352 422 - -
Gabi2179g00258 623 Gene3D Ribonuclease Inhibitor 136 229 IPR032675 -
Gabi2179g00258 623 MobiDBLite consensus disorder prediction 295 325 - -
Gabi2179g00258 623 SUPERFAMILY Protein kinase-like (PK-like) 350 618 IPR011009 -
Gabi2179g00258 623 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Gabi2179g00258 623 Gene3D Transferase(Phosphotransferase) domain 1 423 623 - -
Gabi2179g00258 623 SUPERFAMILY L domain-like 26 208 - -
Gabi2179g00258 623 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00258 Gabi-Chr2179 2367921 2370055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00258 1 623 Receptor kinase-like Gene Family AT3G42880 51.242 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2179g00258 Pkinase 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00258 - - gmx:100788667 927.161