LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2179g00224	ATGGGAAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCTTAACAGAGTACATTAGGGTCCATGGAGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCTGATATTAAGAGAGGCAATATATCCTCAGATGAAGAAGAGCTAATCATCAGGCTTCACAAGCTCCTGGGAAACAGATGGTCTCTAATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACCAATTTAGGTAAAAAAGTTAAAGATCGACACCAAACGAGTACTTGTTCTCGTTTACTCTCTGCTAAACCCAATGGAAAGAGCACACAGAATCCAAAGCAGAACCAACTAACCCCAATGAACACTCCCTCCCATTCAGTATCTCCTCCAAAGCTAGAATCCCATGTGGTTCGTACAAAGGCTGCTAAGTGCTCTAAGGTATTATTCATAAACCCATTACTCCCTCACTCATCAATGCAATTACAGAACAAGTACTCCAAGGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGGCAGAGGCAGAGGCACCATTGCTTGAGGATAATGCTTTAGCCAGCATTAATTCAGTAAGTAACCAAATGGAACCCAGTATGTACGATGATGGGTTTTTGTCATTTCCAAGTGAAGATCACAAAGAACTTTCAACGGATTTGCTCATAGACTTTAACGTGGGTGATATTTGCTTATCTGATCTCCTCAACTCGGATTTCTCAAATATGGGCAATTTCAGTGACAGTAATAACAACAACCCCGAGCTATTATCGCCTTGTTCGGACCAACCTCCTGTGTTCTCTGACGAAATTCTTAAGGACTGGACACAAAGCAATTTTGCTGATGAGACAAATGTGTCAAACAACCTTCGTTCTTTCACTTCGTTCCTCGAGTCCAGTGAGGAAGGACTGGGAGAATGA	1017	0.4258	MGRSPCCSKEGLNRGAWTAHEDKILTEYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDRHQTSTCSRLLSAKPNGKSTQNPKQNQLTPMNTPSHSVSPPKLESHVVRTKAAKCSKVLFINPLLPHSSMQLQNKYSKAEAEAEAEAEAEAEAPLLEDNALASINSVSNQMEPSMYDDGFLSFPSEDHKELSTDLLIDFNVGDICLSDLLNSDFSNMGNFSDSNNNNPELLSPCSDQPPVFSDEILKDWTQSNFADETNVSNNLRSFTSFLESSEEGLGE	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2179g00224	338	FunFam	MYB-related transcription factor	13	66	-	-
	Gabi2179g00224	338	FunFam	Transcription factor TT2	70	145	-	-
	Gabi2179g00224	338	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Gabi2179g00224	338	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Gabi2179g00224	338	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	219	-	-
	Gabi2179g00224	338	CDD	SANT	16	61	IPR001005	-
	Gabi2179g00224	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Gabi2179g00224	338	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Gabi2179g00224	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Gabi2179g00224	338	Coils	Coil	187	207	-	-
	Gabi2179g00224	338	MobiDBLite	consensus disorder prediction	127	159	-	-
	Gabi2179g00224	338	Gene3D	-	14	66	-	-
	Gabi2179g00224	338	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Gabi2179g00224	338	Gene3D	-	70	146	-	-
	Gabi2179g00224	338	CDD	SANT	71	112	IPR001005	-
	Gabi2179g00224	338	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Gabi2179g00224	338	SMART	sant	66	114	IPR001005	-
	Gabi2179g00224	338	SMART	sant	13	63	IPR001005	-
	Gabi2179g00224	338	MobiDBLite	consensus disorder prediction	127	158	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2179g00224	Gabi-Chr2179	2123097	2124492	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2179g00224	1	163	MYB Transcription Factor Family	AT4G38620	57.831	4.94e-63	200

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Gabi2179g00224		Myb_DNA-binding	2.6e-13	CL0123