Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00224 ATGGGAAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCTTAACAGAGTACATTAGGGTCCATGGAGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCTGATATTAAGAGAGGCAATATATCCTCAGATGAAGAAGAGCTAATCATCAGGCTTCACAAGCTCCTGGGAAACAGATGGTCTCTAATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACCAATTTAGGTAAAAAAGTTAAAGATCGACACCAAACGAGTACTTGTTCTCGTTTACTCTCTGCTAAACCCAATGGAAAGAGCACACAGAATCCAAAGCAGAACCAACTAACCCCAATGAACACTCCCTCCCATTCAGTATCTCCTCCAAAGCTAGAATCCCATGTGGTTCGTACAAAGGCTGCTAAGTGCTCTAAGGTATTATTCATAAACCCATTACTCCCTCACTCATCAATGCAATTACAGAACAAGTACTCCAAGGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGGCAGAGGCAGAGGCACCATTGCTTGAGGATAATGCTTTAGCCAGCATTAATTCAGTAAGTAACCAAATGGAACCCAGTATGTACGATGATGGGTTTTTGTCATTTCCAAGTGAAGATCACAAAGAACTTTCAACGGATTTGCTCATAGACTTTAACGTGGGTGATATTTGCTTATCTGATCTCCTCAACTCGGATTTCTCAAATATGGGCAATTTCAGTGACAGTAATAACAACAACCCCGAGCTATTATCGCCTTGTTCGGACCAACCTCCTGTGTTCTCTGACGAAATTCTTAAGGACTGGACACAAAGCAATTTTGCTGATGAGACAAATGTGTCAAACAACCTTCGTTCTTTCACTTCGTTCCTCGAGTCCAGTGAGGAAGGACTGGGAGAATGA 1017 0.4258 MGRSPCCSKEGLNRGAWTAHEDKILTEYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDRHQTSTCSRLLSAKPNGKSTQNPKQNQLTPMNTPSHSVSPPKLESHVVRTKAAKCSKVLFINPLLPHSSMQLQNKYSKAEAEAEAEAEAEAEAPLLEDNALASINSVSNQMEPSMYDDGFLSFPSEDHKELSTDLLIDFNVGDICLSDLLNSDFSNMGNFSDSNNNNPELLSPCSDQPPVFSDEILKDWTQSNFADETNVSNNLRSFTSFLESSEEGLGE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00224 338 FunFam MYB-related transcription factor 13 66 - -
Gabi2179g00224 338 FunFam Transcription factor TT2 70 145 - -
Gabi2179g00224 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi2179g00224 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2179g00224 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 219 - -
Gabi2179g00224 338 CDD SANT 16 61 IPR001005 -
Gabi2179g00224 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi2179g00224 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2179g00224 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2179g00224 338 Coils Coil 187 207 - -
Gabi2179g00224 338 MobiDBLite consensus disorder prediction 127 159 - -
Gabi2179g00224 338 Gene3D - 14 66 - -
Gabi2179g00224 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2179g00224 338 Gene3D - 70 146 - -
Gabi2179g00224 338 CDD SANT 71 112 IPR001005 -
Gabi2179g00224 338 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi2179g00224 338 SMART sant 66 114 IPR001005 -
Gabi2179g00224 338 SMART sant 13 63 IPR001005 -
Gabi2179g00224 338 MobiDBLite consensus disorder prediction 127 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00224 Gabi-Chr2179 2123097 2124492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00224 1 163 MYB Transcription Factor Family AT4G38620 57.831 4.94e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2179g00224 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00224 K09422 - gmx:100802704 432.565