Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00216 ATGTCGGTGAATCTGACACCGAACGCGATCCCGGCGATAGTGGCCGGCGACATGAACTCGAAGCCGTTGGTGCAGGTTCTGGATATCAAGTTGATTTCGAATAGTAAGCAGCAGGAGAGGTACCGAATTTTGCTTTCCGATGCCGTTTACTCTCAGCAAGCCATGCTCGCGACTCAGCTCAACGGCCGAGTCAAAACCGAACGAGTTAAGAAAGGTTCCATTGTTCAGCTGATCGAGTATATTTGCAGTCCTATTCAGAACCGCAAGATTGTTGTGGTGCTCAGCATGGAAACTATAATACTAGAGTGCAATATCATTGGAAATCCAAAGTCATTTGTGGAATCTGATTTACCAACTCAGGAAGCATTACCTAATAACAATACGCAGAACTCATCCAGGAGTAATAATTATCACCTTACAGCTCGAAATACAAGTTGTAATGTGCAGAATTTCCGGCCAACTGTTCAACCACCATACCAACCGCCTCCAGTTTACAAAAGCCATGGTGCAATTGTGAAAAATGAGGCCCCAACACGTATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTAACTGCAAAGGGGGATCTACGCCGCTATAATAATGGTCGGGGAGATGGGAAGGTCCTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATGCAGTTGTTGATCACTTCTATGATGCAATCGAGGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAACTTCAACCATTTGAAGAATGAATGGGAAATCTTTTTGGAATTGACATCAACTGTTGAACTTTGCCCGGACGAAGATGGTTCTATACCTAGACAGCAATTCTCCTTTAGGCCTATCAGTGATATTGAGAATGTTGACAGCAACTCCATTCTAGATGTTATTGGGGTTGTGACATCTGTGAATCCATCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAGTTTTGAATCTAAAGGACTGTTCTGGCAAGAGTGTTGAGCTAACCCTTTGGGGTGAATTTTGCAACAGGGAAGGGCAAAAGTTGCAAGAGAGGGTGGATGCTGGCTTTTTCCCTATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGGAAATCTATAGGGACTATTTCTGCTACACAGCTTTTCGTAAATCCAGATTTTCCTGAGGCATGTAGCTTAAGGGGCTGGTTTGATCGAGTGGGAAAAGATTCTGCTTCTCTGTCCATTTCTAAGGACATTGTACCTGGAGGACCTATGAATGATGTACGTAAAACTGTGTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCAGATAAGCCAGATTGGATAACAGTGAGAGCAACCATATCTTTCATCAAGACAGATACGTTTTGTTACACCGCTTGCCCTATGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGTCAGGAAATACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATATCTTCTTCAAGCTCAAATTCTGGATCATACTGGAGTAACTTGGGTTACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCCGCAAAGGAGATATACTTGTTGAAGTATGAACAGCAGGATGATGAGAAGTTTGGAGGAATAATCAAGAGTAGGCTCTTCAACCAATTTGTCTTCAGGCTGAAAATCAAAGAGGAATTGTATGGTGATGAACAGAGGGTGAAGATTACAGTAGTTAAGGCTGATAAAGTGAATTATTCTTCGGAGAGTGGATACATGCTTGATTCAGTTTCAATGTTTAGTAGGCAGTAA 1881 0.4296 MSVNLTPNAIPAIVAGDMNSKPLVQVLDIKLISNSKQQERYRILLSDAVYSQQAMLATQLNGRVKTERVKKGSIVQLIEYICSPIQNRKIVVVLSMETIILECNIIGNPKSFVESDLPTQEALPNNNTQNSSRSNNYHLTARNTSCNVQNFRPTVQPPYQPPPVYKSHGAIVKNEAPTRIIPIAALNPYQGRWAIKARVTAKGDLRRYNNGRGDGKVLSFDLLDSDGGEIRVTCFNAVVDHFYDAIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLELTSTVELCPDEDGSIPRQQFSFRPISDIENVDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDCSGKSVELTLWGEFCNREGQKLQERVDAGFFPILAVKAGKVNDFSGKSIGTISATQLFVNPDFPEACSLRGWFDRVGKDSASLSISKDIVPGGPMNDVRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPMMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGVTWVTAFQESGEEILGYSAKEIYLLKYEQQDDEKFGGIIKSRLFNQFVFRLKIKEELYGDEQRVKITVVKADKVNYSSESGYMLDSVSMFSRQ 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00216 626 Gene3D - 292 430 IPR012340 -
Gabi2179g00216 626 FunFam Replication protein A subunit 292 430 - -
Gabi2179g00216 626 NCBIfam replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2179g00216 626 PANTHER REPLICATION FACTOR A 1, RFA1 193 600 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2179g00216 626 Gene3D - 178 289 IPR012340 -
Gabi2179g00216 626 Gene3D - 435 623 IPR012340 -
Gabi2179g00216 626 FunFam Replication protein A subunit 431 623 - -
Gabi2179g00216 626 CDD RPA1_DBD_B 314 421 - -
Gabi2179g00216 626 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi2179g00216 626 SUPERFAMILY Nucleic acid-binding proteins 297 424 IPR012340 -
Gabi2179g00216 626 FunFam Replication protein A subunit 179 288 - -
Gabi2179g00216 626 Pfam Replication factor-A C terminal domain 465 614 IPR013955 -
Gabi2179g00216 626 FunFam Replication protein A subunit 4 113 - -
Gabi2179g00216 626 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi2179g00216 626 Pfam Replication protein A OB domain 303 407 IPR031657 -
Gabi2179g00216 626 Gene3D - 3 113 IPR012340 -
Gabi2179g00216 626 CDD RPA1_DBD_A 182 285 - -
Gabi2179g00216 626 Pfam OB-fold nucleic acid binding domain 194 275 IPR004365 GO:0003676
Gabi2179g00216 626 CDD RPA1_DBD_C 449 621 IPR047192 -
Gabi2179g00216 626 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Gabi2179g00216 626 SUPERFAMILY Nucleic acid-binding proteins 180 292 IPR012340 -
Gabi2179g00216 626 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00216 Gabi-Chr2179 2050956 2054020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00216 26 618 Core DNA Replication Machinery Family AT2G06510 69.722 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00216 K07466 - zju:107409151 1026.93