Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00209 ATGAAGCCGTTCTTCTTGTTGAATCATCCTGATACTATGTACAATTGTTCACAAGCTGATTTTAGTCAGTCAATGGTCCGTGCTCCTTATCCGTATGGTGATCCTTTTTTTGGTGGTTCATTAGTTGCGTATGGACCACAGGCTATTAATCAACCCCAGATGTTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCACTTGATCTTACAGAAGATGTGCCCATTTATGTCAATGCAAAACAATATCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAATCGTAAGCCATATCTTCATGAGTCCCGGCACCGCCATGCATTGAATAGGGTTAGGGGATCCGGGGGACGCTTTCTTAGTGCCAAACAGCTACAGCGATCTAATTCAGAACTTGTTTCAGGTGCCCATTCAGGCTCAGACCCTGTCAACGTTTATCATAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTTCTATCACAACCTTATCTGGACTAACAAGTTTGTCCAGTAACAGTGTCAATTTTAGGCAGCCTGAGCACATGTTCTTGGGGAACTCCACAAATATGAGTGGGGCATCACAATGCAGTGGGGGACTCACCTTTGGTGGTGGAATTCAGCAATGTGCTCCAGTTGGTCGGTGA 705 0.4482 MKPFFLLNHPDTMYNCSQADFSQSMVRAPYPYGDPFFGGSLVAYGPQAINQPQMLPQMLGLASTRIALPLDLTEDVPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSAKQLQRSNSELVSGAHSGSDPVNVYHKKDASEVESHPSRTGENASSITTLSGLTSLSSNSVNFRQPEHMFLGNSTNMSGASQCSGGLTFGGGIQQCAPVGR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00209 234 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Gabi2179g00209 234 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Gabi2179g00209 234 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Gabi2179g00209 234 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Gabi2179g00209 234 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Gabi2179g00209 234 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Gabi2179g00209 234 MobiDBLite consensus disorder prediction 161 180 - -
Gabi2179g00209 234 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 194 IPR001289 GO:0003700|GO:0006355
Gabi2179g00209 234 Gene3D - 74 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00209 Gabi-Chr2179 1992186 1995555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00209 17 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.317 3.45e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2179g00209 CBFB_NFYA 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00209 K08064 - gmx:100792905 351.673