Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00208 ATGAAGCCGTTCTTCTTGTTGAATCATCCTGATACTATGTACAATTGTTCACAAGCTGATTTTAGTCAGTCAATGGTCCGTGCTCCTTATCCGTATGGTGATCCTTTTTTTGGTGGTTCATTAGTTGCGTATGGACCACAGGCTATTATGTTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCACTTGATCTTACAGAAGATGTGCCCATTTATGTCAATGCAAAACAATATCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAATCGTAAGCCATATCTTCATGAGTCCCGGCACCGCCATGCATTGAATAGGGTTAGGGGATCCGGGGGACGCTTTCTTAGTGCCAAACAGCTACAGCGATCTAATTCAGAACTTGTTTCAGGTGCCCATTCAGGCTCAGACCCTGTCAACGTTTATCATAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTTCTATCACAACCTTATCTGGACTAACAAGTTTGTCCAGTAACAGTGTCAATTTTAGGCAGCCTGAGCACATGTTCTTGGGGAACTCCACAAATATGAGTGGGGCATCACAATGCAGTGGGGGACTCACCTTTGGTGGTGGAATTCAGCAATGTGCTCCAGTTGGTCGGTGA 693 0.4473 MKPFFLLNHPDTMYNCSQADFSQSMVRAPYPYGDPFFGGSLVAYGPQAIMLPQMLGLASTRIALPLDLTEDVPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSAKQLQRSNSELVSGAHSGSDPVNVYHKKDASEVESHPSRTGENASSITTLSGLTSLSSNSVNFRQPEHMFLGNSTNMSGASQCSGGLTFGGGIQQCAPVGR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00208 230 ProSitePatterns NF-YA/HAP2 subunit signature. 75 95 IPR018362 GO:0003677|GO:0016602
Gabi2179g00208 230 ProSiteProfiles NF-YA/HAP2 family profile. 70 130 IPR001289 GO:0003700|GO:0006355
Gabi2179g00208 230 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 190 IPR001289 GO:0003700|GO:0006355
Gabi2179g00208 230 SMART cbf3 69 130 IPR001289 GO:0003700|GO:0006355
Gabi2179g00208 230 Gene3D - 70 132 - -
Gabi2179g00208 230 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 73 127 IPR001289 GO:0003700|GO:0006355
Gabi2179g00208 230 MobiDBLite consensus disorder prediction 157 176 - -
Gabi2179g00208 230 PRINTS CCAAT-binding transcription factor subunit B signature 73 95 IPR001289 GO:0003700|GO:0006355
Gabi2179g00208 230 PRINTS CCAAT-binding transcription factor subunit B signature 104 127 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00208 Gabi-Chr2179 1992186 1995556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00208 17 136 CCAAT-HAP2 Transcription Factor Family AT1G17590 62.295 6.31e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2179g00208 CBFB_NFYA 2.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00208 K08064 - gmx:100792905 347.051