Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00204 ATGGACGGTGGAGCGCAGTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGCCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGGTTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCCGTTCACGGCGATGCATGGTTACTTGCCGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAAATCTGACAGGAAACGGCTGTTCACTATGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAGCTGAAAAGAAACAGGCTAAGGAAAAGTCATCTGTCTCAAACATCACCAGCACCAAATCAAAGTCCAGTTCAAAAGGGGTAAAAGAAAAACGAGGATCTGAACCAGAGAAGTATTCGAAGCAAACAAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCCGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAACACGGCCTTGA 765 0.4693 MDGGAQYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGAEKKQAKEKSSVSNITSTKSKSSSKGVKEKRGSEPEKYSKQTKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00204 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Gabi2179g00204 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Gabi2179g00204 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Gabi2179g00204 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Gabi2179g00204 254 SMART PHD_3 200 248 IPR001965 -
Gabi2179g00204 254 CDD PHD_AL_plant 200 250 IPR044104 -
Gabi2179g00204 254 MobiDBLite consensus disorder prediction 162 184 - -
Gabi2179g00204 254 Pfam PHD-finger 201 250 IPR019787 -
Gabi2179g00204 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Gabi2179g00204 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi2179g00204 254 MobiDBLite consensus disorder prediction 145 193 - -
Gabi2179g00204 254 FunFam PHD finger alfin-like protein 193 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00204 Gabi-Chr2179 1975105 1977791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00204 1 253 Alfin-like Transcription Factor Family AT3G42790 74.803 1.69e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2179g00204 Alfin 1.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00204 K26274 - gmx:100500110 438.343